View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_high_2 (Length: 630)
Name: NF11681_high_2
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 163 - 617
Target Start/End: Original strand, 33120392 - 33120847
Alignment:
| Q |
163 |
gcaaagaattaagttccacaatatgaggaaagcatgtggattgcgtccttgagatgaatgtaattgtcggtgttatacatgtggctcttgtggaacttgt |
262 |
Q |
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| T |
33120392 |
gcaaagaattaagttccacaatacgaggaaagcatgtggattgcgtccttgagatgaatgtaattgtcggtgttatacatatggctcttgtggaacttgt |
33120491 |
T |
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| Q |
263 |
agcacttcgcnnnnnnngattatgagcttctatgtggcaggttttgggaatttgattccacttccttgaattccacgactcagagagaatatactccctt |
362 |
Q |
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|||||||| | |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33120492 |
agcacttcactttttttgattctgagcttctgtgtggaaggttttgggaatttgattccacttccttgaattccacgactcagagagaatatactccttt |
33120591 |
T |
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| Q |
363 |
aatgactaaagatgagtatattcacgtaatcgaccaacttgttatcaactcnnnnnnnn-ataagtttttcttccccatgtttcgctttgttatttctcc |
461 |
Q |
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| T |
33120592 |
aatgactaaagatgagtatattcacgtaatcgaccaacttgttatcaactctttttttttataggtttttcttccccatgtttcactttgttatttctcc |
33120691 |
T |
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| Q |
462 |
tcgatgactcaacatatggttcttctccttattcaaatttcttgacttccacaatgttgagtttctctttgtaccttatgtcggttttagctttgtttaa |
561 |
Q |
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| T |
33120692 |
tccatgactcaacatatgattcttctccttattcaaatttcttgacttccacaatgttgagtttctctttgtaccttatgtcggttttagctttgtttaa |
33120791 |
T |
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| Q |
562 |
ggagtcgttgagatttcttggctcttcgactttgatggctttattgacgttgattc |
617 |
Q |
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| T |
33120792 |
ggagtcgttgagatttcttggctcttcgactttgatggccttattgacgttgattc |
33120847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 33120132 - 33120251
Alignment:
| Q |
24 |
tctagtgaccgtcttcggctcaagatgtttggtgggcattgttagtgtgaattccagaacaatttcccttccgactgttccgttgtttagagtgattact |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33120132 |
tctagtgaccgtcttcggctcaagatgtttggtgggcattgttagtgtgaattccagaacaatttcccttccggttgttccgttgtttagagtgattact |
33120231 |
T |
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| Q |
124 |
ttgtatgatgtaagtatgag |
143 |
Q |
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| T |
33120232 |
ttgtatgatgtaagtatgag |
33120251 |
T |
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