View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11681_high_5 (Length: 530)

Name: NF11681_high_5
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11681_high_5
NF11681_high_5
[»] chr2 (4 HSPs)
chr2 (241-525)||(30697607-30697893)
chr2 (20-179)||(30697388-30697546)
chr2 (291-337)||(19545781-19545827)
chr2 (276-337)||(9027568-9027629)
[»] chr1 (1 HSPs)
chr1 (287-345)||(1594088-1594146)
[»] chr5 (2 HSPs)
chr5 (285-345)||(16371125-16371185)
chr5 (276-335)||(12554660-12554719)
[»] chr4 (1 HSPs)
chr4 (276-345)||(4962924-4962993)
[»] chr7 (1 HSPs)
chr7 (276-336)||(30919626-30919686)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 241 - 525
Target Start/End: Original strand, 30697607 - 30697893
Alignment:
Q  241 acgaatcctgaaaataaactctactaaa-tgcaataaaacttgccacttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttctta 339  Q
    |||||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30697607 acgaatcctttaaagaaactctactaaaatgcaataaaacttgctacttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttctta 30697706  T
Q  340 tcatcacaacccaaacttgaa-ttttgtttgtactcaaactaatatacttgtaattcaatagaaaagtaacgaatttccctgaatgataaattatgaaaa 438  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||| | ||| ||||||||||||||||||    
T  30697707 tcatcacaacccaaacttgaacttttgtttatactcaaactaatatacttgtaattcaatagaaaaataacaaatcttccttaatgataaattatgaaaa 30697806  T
Q  439 gtctttaactaacccgacaatggaacaactaacatttgatgcattcttttgctcaaaagattatagttctctagacttcatctcact 525  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  30697807 gtctttaactaacccagctatggaacaactaacatttgatgcattctttttctcaaaagattatagttctctagactttatgtcact 30697893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 30697388 - 30697546
Alignment:
Q  20 tggctcgtagcacgcaacacgagttagacagtagatgatcttgtgattttctttcattccttgttctatttatttttattgaaacatcattaatgactat 119  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30697388 tggctcgtagcatggaacacgagttagacagtagatgatcttgtgattttctt-cattccttgttctatttatttttattgaaacatcattaatgactat 30697486  T
Q  120 acactaagaataacataataaaacttgtaatcaccatattaaggtcacaaagttgtctag 179  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30697487 acactaagaataacataataaaacttgtaatcgccatattaaggtcacaaagttgtctag 30697546  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 19545827 - 19545781
Alignment:
Q  291 actctaaaatgactctaaaaagccactaaaaaccctatatgatttct 337  Q
    ||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  19545827 actctaaaatgactctaaaaagagactgaaaatcctatatgatttct 19545781  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 9027629 - 9027568
Alignment:
Q  276 aaacttgccacttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttct 337  Q
    |||||||| ||||  ||| ||| |||| ||||||| | ||||||||||||||||||||||||    
T  9027629 aaacttgctacttgaactttaacatgattctaaaatgacactaaaaaccctatatgatttct 9027568  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 1594146 - 1594088
Alignment:
Q  287 ttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttcttatcatca 345  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||    
T  1594146 ttttactctaaaataaatctaaaaagacactaaaaaccctatatgatttcttgtcatca 1594088  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 16371125 - 16371185
Alignment:
Q  285 acttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttcttatcatca 345  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||||||| ||| ||||    
T  16371125 acttttactctaaaatgactctaaaaagacattaaaaaccctatttgatttcctattatca 16371185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 12554719 - 12554660
Alignment:
Q  276 aaacttgccacttttactctaaaatgactctaaaaagccactaaaaaccctatatgattt 335  Q
    ||||| || ||||||||| |||| |||||||||||||  || ||||||||||||||||||    
T  12554719 aaactagctacttttactttaaattgactctaaaaaggaaccaaaaaccctatatgattt 12554660  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 4962924 - 4962993
Alignment:
Q  276 aaacttgccacttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttcttatcatca 345  Q
    ||||||||||||||||| ||||||||||||||||||| |||| |||| | ||||||| ||| | ||||||    
T  4962924 aaacttgccacttttaccctaaaatgactctaaaaagacacttaaaatcttatatgacttcatgtcatca 4962993  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 30919626 - 30919686
Alignment:
Q  276 aaacttgccacttttactctaaaatgactctaaaaagccactaaaaaccctatatgatttc 336  Q
    ||||| || ||||| ||||||||||||  ||||||||   |||||||||||||||||||||    
T  30919626 aaactagctactttaactctaaaatgatactaaaaaggagctaaaaaccctatatgatttc 30919686  T

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