View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_high_6 (Length: 500)
Name: NF11681_high_6
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Complemental strand, 33496323 - 33495850
Alignment:
| Q |
19 |
agattggagatggctcgaaaataaatctatgtaccatgccttgaatacgtaatctttcttctcacaaaccttcaactcctatgtcgtctcttcatgaaga |
118 |
Q |
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| T |
33496323 |
agattggagatggctcgaaaataaatctatgtaccatgccatgaatacgtaatctttcttctcacaaaccttcaactcctatgccgtctcttcatgaaga |
33496224 |
T |
|
| Q |
119 |
tcttacagtgaattacttgttgaatacggaaggcctttcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctcc |
218 |
Q |
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||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33496223 |
tcttacagtgaattacttgctgaat-cggaaggcctctcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctcc |
33496125 |
T |
|
| Q |
219 |
atccctctccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccctcatgattctgcccacgat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33496124 |
atccctctccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccctcatgattctgcccacaat |
33496025 |
T |
|
| Q |
319 |
aattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagcctttatatggcatttagctcatcattgcttgcccgcccatgtcaatc |
418 |
Q |
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|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| |
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| T |
33496024 |
aattctctttggatgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttcttgcccacccgtgtcaatc |
33495925 |
T |
|
| Q |
419 |
ttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattcatctct |
493 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33495924 |
ttaatgtaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctct |
33495850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 4243225 - 4243467
Alignment:
| Q |
21 |
attggagatggctcgaaaataaatctatgtaccatgccttgaatacgtaatctttcttctcacaaaccttcaactcctatgtcgtctcttcatgaagatc |
120 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||| || ||| ||||||||| | |
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| T |
4243225 |
attggagatggctcgaaaataaatctatggaccatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagacc |
4243324 |
T |
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| Q |
121 |
ttacagtgaattacttgttgaatacggaaggcctttcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctccat |
220 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4243325 |
ttacagtgaattacttgttgaatctggaaggcctctcttggaaccaacaaatagttacatccattttcaatccccaagacgctgctgctatactctccat |
4243424 |
T |
|
| Q |
221 |
ccctctccataaccgtctgttgtttgacaccagaatatggaaa |
263 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
4243425 |
ccctctacataaccgtctgttgtctgacaccagaatatggaaa |
4243467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 277 - 493
Target Start/End: Original strand, 4243510 - 4243726
Alignment:
| Q |
277 |
atttgtattgatctactccaccctcatgattctgcccacgataattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagccttta |
376 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
4243510 |
atttgtagtgatctactccaccctcatgattctgcccacaataattcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttc |
4243609 |
T |
|
| Q |
377 |
tatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcgga |
476 |
Q |
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|||||| |||||||||| ||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
4243610 |
tatggcgtttagctcataattgcttgcccactcgtgtcaatcttaatgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcgga |
4243709 |
T |
|
| Q |
477 |
atcccacattcatctct |
493 |
Q |
| |
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|| ||||| |||||||| |
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| T |
4243710 |
atgccacactcatctct |
4243726 |
T |
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