View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_low_13 (Length: 242)
Name: NF11681_low_13
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36724867 - 36724645
Alignment:
| Q |
1 |
tttatgggacaaaattgatagaattctacgccaaaattataatatggacgtggttgtctttacccttttacaccagcttagcctgagccaaagtaaactc |
100 |
Q |
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| T |
36724867 |
tttatgggacaaaattgatagaattctacgccaaaattataatatggacgtggttgtctttacccttttacaccagcttagcccgagccaaagtaaactc |
36724768 |
T |
|
| Q |
101 |
tttaccacagttttatggagtttatgaaatagaggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatct |
200 |
Q |
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| T |
36724767 |
tttaccacagttttatggagtttatgaaagagaggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgagcaacgcatct |
36724668 |
T |
|
| Q |
201 |
tcttgaggattggagattggctc |
223 |
Q |
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||||||| ||||||||| ||||| |
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| T |
36724667 |
tcttgagaattggagatcggctc |
36724645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 716862 - 717053
Alignment:
| Q |
1 |
tttatgggacaaaattgatag---aattctacgccaaaattataatatggacgtggttgtctttacccttttacaccagcttagcctgagccaaagtaaa |
97 |
Q |
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| T |
716862 |
tttatgggacaaaattggtagtataattcttcgcgaaaattataatatagatgtggtggtctttacccttctgcaccagcttggctcgagccaaagtgaa |
716961 |
T |
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| Q |
98 |
ctctttaccacagttttatggagtttatgaaatag-aggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacg |
188 |
Q |
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| T |
716962 |
ctctttgcaacatttttatggagtttatggaagagaaggaacttgaaactttggtggcaaaagaatgaaacaaacatgcaggtggttgaacg |
717053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 711791 - 711869
Alignment:
| Q |
133 |
aggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggatt |
211 |
Q |
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| T |
711791 |
aggaacttgaaaccttggcagcaaaagaacgaaacaaacatgcaggtggttgaacgagcaatgcaccttctcgaggatt |
711869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 14540075 - 14540291
Alignment:
| Q |
11 |
aaaattgatagaattctacgccaaaattataatatggacgtggttgtctttacccttttacaccagcttagcctgagccaaagt---aaactctttacca |
107 |
Q |
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| T |
14540075 |
aaaattgatagaattcttcgtcaaaattataatatggacgtggtggtctttacccttctacaccagcttagtctgagcaaaagtgaacaactctttgcca |
14540174 |
T |
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| Q |
108 |
cagttttatggagtttatgaaatag-aggaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttga |
206 |
Q |
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| T |
14540175 |
tagttttatggagtttatggaagggaaataactggaaactttggcagcaaaagaacaaaacaaatacgcaggtgggtgaacgagcaacacaccttcttga |
14540274 |
T |
|
| Q |
207 |
ggattggagattggctc |
223 |
Q |
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||||||||||| ||||| |
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| T |
14540275 |
ggattggagatcggctc |
14540291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12715583 - 12715536
Alignment:
| Q |
1 |
tttatgggacaaaattgatagaattctacgccaaaattataatatgga |
48 |
Q |
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||||||||||| ||||||||||| ||| ||| |||||||||||||||| |
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| T |
12715583 |
tttatgggacacaattgatagaactcttcgcaaaaattataatatgga |
12715536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12776814 - 12776767
Alignment:
| Q |
1 |
tttatgggacaaaattgatagaattctacgccaaaattataatatgga |
48 |
Q |
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|
||||||||||| ||||||||||| ||| ||| |||||||||||||||| |
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| T |
12776814 |
tttatgggacacaattgatagaactcttcgcaaaaattataatatgga |
12776767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 29984959 - 29985012
Alignment:
| Q |
163 |
gaaacaaatatgcaggtggttgaacgtgtaacgcatcttcttgaggattggaga |
216 |
Q |
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| T |
29984959 |
gaaacaaatatgcaggttgttgaacgtgctacacatcttcttgatgaatggaga |
29985012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 36473707 - 36473786
Alignment:
| Q |
110 |
gttttatggagtttatgaaatagag-gaacttgaaactttgccagcaaaggaacgaaacaaatatgcaggtggttgaacg |
188 |
Q |
| |
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|||||||||||||| ||||| ||| ||| ||||| ||||| || |||| ||| ||||| |||||||||||||||||||| |
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| T |
36473707 |
gttttatggagtttttgaaagagaatgaatttgaagctttggcaacaaaagaatgaaacgaatatgcaggtggttgaacg |
36473786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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