View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_low_16 (Length: 240)
Name: NF11681_low_16
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 29466468 - 29466324
Alignment:
| Q |
65 |
acttttattattagtcgaaataagattatcaaaaaataaactctttctttttatttttaggataaagattagaagactctataaacactttattgaatta |
164 |
Q |
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| T |
29466468 |
acttttattattagtcgaaataagattatcaaaaaataaactctttctttt-attttttggataaagattagaagactgtataaaca-----ttgaatta |
29466375 |
T |
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| Q |
165 |
gactacttgacatgtcatctcatttttgccacatatacacaagattaccac |
215 |
Q |
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| T |
29466374 |
gactacttcacatgtcacctcatttttgccacatatacacaagattaccac |
29466324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 29466558 - 29466514
Alignment:
| Q |
5 |
ttgttataaaaatattttgtaactatacaacttattttaatctct |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29466558 |
ttgttataaaaatattttgtaactatacaacttattttaatctct |
29466514 |
T |
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