View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_low_19 (Length: 232)
Name: NF11681_low_19
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 7145684 - 7145883
Alignment:
| Q |
22 |
tgacctggtgagttgtcttgagaattagggctaatcagacctggttgtgtgatgggagagtcatgggcatcagacatagtagataacctagaaggccgaa |
121 |
Q |
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| T |
7145684 |
tgacctggtgagttgtcttgagaattagggctaatcacacctggttgtgtgatgggagagtcatgggcatcagacatagtagataacctagaaggccgaa |
7145783 |
T |
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| Q |
122 |
attgaaaggtgcgacgacgaggacgaagatctcctgagcgcttattcttaattctaatcaaggtcttggcaatctcagcctccttacctcccttcttctc |
221 |
Q |
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| T |
7145784 |
attgaaaggtgcgacgacgaggacgaagatctcctgagcgcttattcttaattctaatcaaggtcttggcaatctcagcctccttacctcccttcttctc |
7145883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 7145623 - 7145656
Alignment:
| Q |
33 |
gttgtcttgagaattagggctaatcagacctggt |
66 |
Q |
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| T |
7145623 |
gttgtcttgagaattagggctaatctgacctggt |
7145656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 28816927 - 28817135
Alignment:
| Q |
19 |
atctgacctggtgagttgtcttgagaattagggctaatcagacctggttgtgtgatgggagagtcatgggcatcagacatagtagataacctagaaggcc |
118 |
Q |
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| T |
28816927 |
atctgacctggtcggttgtcttgagaattacagctaatctgagctggttgtgtgatgggagaatcatgggcatcagacacagtagataacctagaaggcc |
28817026 |
T |
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| Q |
119 |
gaaattgaaaggtgcgacgacgaggacgaagatctcc------tgagcgcttattcttaattctaatcaaggtcttggcaatctcagcctccttacctcc |
212 |
Q |
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| T |
28817027 |
gaatttgaaaggcgcgacgacgaggacgaagatctccttttcgtgagcgcttgcgcctaattgtaatcaaggtcttggcaatctcagcctccttccctcc |
28817126 |
T |
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| Q |
213 |
cttcttctc |
221 |
Q |
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| T |
28817127 |
cttcttctc |
28817135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 28817395 - 28817280
Alignment:
| Q |
37 |
tcttgagaattagggctaatcagacctggttgtgtgatgggagagtcatgggcatcagacatagtagataacctagaaggccgaaattgaaaggtgcgac |
136 |
Q |
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| T |
28817395 |
tcttgagaattagggctaatctgagctggttttgtgatgggataatcatgggcatcagacacagtaggtaacctagaaggcctaatttgaaaggcccgac |
28817296 |
T |
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| Q |
137 |
gacgaggacgaagatc |
152 |
Q |
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| T |
28817295 |
gacgaggatgaagatc |
28817280 |
T |
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