View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_low_3 (Length: 606)
Name: NF11681_low_3
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 41598724 - 41598140
Alignment:
| Q |
18 |
aagtataccgtcctccttggcaaattccagatccattccctagggatatcgatgggtttaacgctggatgcgtgatccgcaaacaacttcatcacnnnnn |
117 |
Q |
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| T |
41598724 |
aagtataccgtcctccttggcaaattccagatccattccctagggatatcgatgggtttaacgctggatgcatgatccgcaaacaacttcatcgcaaaaa |
41598625 |
T |
|
| Q |
118 |
nnnn----ggttttatagaccattggtggtgagtattgaaaatttaatataaggtcattttgttaaggtgactggaacagtaccaaaactagattacact |
213 |
Q |
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| T |
41598624 |
aaaaaaaaggttttatagaccattggtggtgagtattgaaa-tttaatataaggtaattttgttaaggtgactggaacagtaccaaaactagattacact |
41598526 |
T |
|
| Q |
214 |
tacctcattaacttgaaagtaagttccattcagcggaaaacttccccttgctgctgttcgacacggtatctgtatatgagagaacatttgtgaaagttat |
313 |
Q |
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| T |
41598525 |
tacctcattaacttgaaagtaagttccattcagcggaaaacttccccttgctgctgttcgacacggtatctgtatatgagagaacatttgtgaaagttat |
41598426 |
T |
|
| Q |
314 |
taaaaaatagagggctaatgctgttaatttaacatttgtcaaagtaaccattaccagaagtgttcctctcacaatctgtgaattcgcttctctaatgctg |
413 |
Q |
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| T |
41598425 |
taaaaaatagagggctaatgctgttaatttaacatttgtcaaagtaatcattaccagaagtgttcctctcacaatctgtgaatttgcttctctaatgctg |
41598326 |
T |
|
| Q |
414 |
ttgcatgaaaagcatgtcttgtcattgcacaggttggttgagtctccgcacttcctttgtggtggttcaatggaatttgcagtctcacctagtgttcaaa |
513 |
Q |
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| T |
41598325 |
ttgcatgaaaagcatgtcttgtcattgcacaggttggttgagtctccgcacttcctttgtggtggttcaatggaatttgcagtctcacctagtgttcaaa |
41598226 |
T |
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| Q |
514 |
tgtcataattcataaatactgtt-tgaatatacgtagtaatgatcttgcctgtgcctaatattattttttgataacagcctatgct |
598 |
Q |
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| T |
41598225 |
tgtcataattcataaatactgttgtgaatatacgtagtaatgatcttgcctgtgcctaatattattttttgataacagcctatgct |
41598140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 41922216 - 41922177
Alignment:
| Q |
215 |
acctcattaacttgaaagtaagttccattcagcggaaaac |
254 |
Q |
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| T |
41922216 |
acctcattaacttgaaagtatgttccattcagaggaaaac |
41922177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 36001415 - 36001383
Alignment:
| Q |
213 |
ttacctcattaacttgaaagtaagttccattca |
245 |
Q |
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| T |
36001415 |
ttacctcattaacttgaaagtatgttccattca |
36001383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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