View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11681_low_4 (Length: 596)
Name: NF11681_low_4
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11681_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 202 - 433
Target Start/End: Original strand, 48285945 - 48286172
Alignment:
| Q |
202 |
ttgcattttgtccctatgtggcatggacacaaataacgtgacaacaaatttgtcctcttcctgctccttatccccctctcatgaccaaagactttgtttg |
301 |
Q |
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| T |
48285945 |
ttgcattttgtccctatgtggcatggacacaaataacgtgacaacaaatttgtcctcttcctgctccttatccccctctcatgaccaaagac----tttg |
48286040 |
T |
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| Q |
302 |
tatgttccattc-----tctcttctcttatccctcatgcaacgaacaaccttcatcnnnnnnnnnnnnnnnncttcccatccaatccaatccaagattta |
396 |
Q |
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| T |
48286041 |
tatgttccattctctcttctcttctcttatccctcatgcaacgaacaaccttcatcttttctttttatttttcttccc-----atccaatccaagattta |
48286135 |
T |
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| Q |
397 |
gatctaaaaccacccacattcaacattttcattatct |
433 |
Q |
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| T |
48286136 |
gatctaaaaccacccacattcaacattttcattatct |
48286172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 499 - 577
Target Start/End: Original strand, 48286251 - 48286329
Alignment:
| Q |
499 |
acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagaccca |
577 |
Q |
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| T |
48286251 |
acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagaccca |
48286329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 48285774 - 48285869
Alignment:
| Q |
15 |
acatcaacgtcaattgtaatgttggattcaattttaaaaattggataaa-tgagggattaatattgggaatttaaaaatagcgggaccaaaatcaa |
109 |
Q |
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| T |
48285774 |
acatcaacgtcaattgtaatgttggattcaattttaaaaattgaataaattgagggactaaaattgggaatttagaaatagcgggacgaaaatcaa |
48285869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 48285890 - 48285928
Alignment:
| Q |
165 |
aaggagggtaaaaatgtatttaacaactaaaaatccctt |
203 |
Q |
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| T |
48285890 |
aaggagggtaaaaatgtatttaacaactaaaaatccctt |
48285928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 9487361 - 9487393
Alignment:
| Q |
24 |
tcaattgtaatgttggattcaattttaaaaatt |
56 |
Q |
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| T |
9487361 |
tcaattgaaatgttggattcaattttaaaaatt |
9487393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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