View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11681_low_7 (Length: 338)

Name: NF11681_low_7
Description: NF11681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11681_low_7
NF11681_low_7
[»] chr7 (9 HSPs)
chr7 (1-322)||(42014037-42014359)
chr7 (4-322)||(46526320-46526637)
chr7 (1-305)||(6272752-6273058)
chr7 (1-290)||(41964264-41964561)
chr7 (131-306)||(10554526-10554701)
chr7 (140-321)||(31593722-31593903)
chr7 (102-236)||(45075572-45075708)
chr7 (1-70)||(45415241-45415310)
chr7 (156-276)||(3939876-3939996)
[»] chr8 (8 HSPs)
chr8 (1-322)||(41269761-41270083)
chr8 (1-306)||(44115820-44116124)
chr8 (103-322)||(42095767-42095987)
chr8 (102-322)||(8317041-8317262)
chr8 (131-322)||(20477648-20477839)
chr8 (130-322)||(18701199-18701391)
chr8 (1-66)||(18701051-18701116)
chr8 (1-70)||(42095658-42095727)
[»] chr3 (15 HSPs)
chr3 (3-322)||(48164707-48165024)
chr3 (1-322)||(177722-178043)
chr3 (1-318)||(18942898-18943216)
chr3 (1-305)||(45034591-45034894)
chr3 (109-322)||(52560990-52561204)
chr3 (3-186)||(18911880-18912064)
chr3 (131-295)||(55150764-55150928)
chr3 (181-308)||(18908115-18908242)
chr3 (191-322)||(9089-9220)
chr3 (130-322)||(54315312-54315504)
chr3 (102-185)||(10817-10901)
chr3 (102-308)||(13825446-13825653)
chr3 (1-70)||(52561254-52561323)
chr3 (1-70)||(23585225-23585293)
chr3 (1-70)||(23600048-23600116)
[»] chr5 (8 HSPs)
chr5 (1-306)||(10825615-10825919)
chr5 (1-322)||(7262837-7263167)
chr5 (102-306)||(19876498-19876703)
chr5 (102-322)||(37980261-37980481)
chr5 (141-306)||(24169462-24169627)
chr5 (102-234)||(23067167-23067300)
chr5 (1-70)||(19876746-19876815)
chr5 (1-70)||(23067342-23067411)
[»] chr1 (9 HSPs)
chr1 (1-322)||(31387430-31387748)
chr1 (1-306)||(27105925-27106230)
chr1 (1-322)||(4911837-4912156)
chr1 (1-306)||(46192193-46192497)
chr1 (1-306)||(42463524-42463827)
chr1 (1-322)||(15291479-15291809)
chr1 (157-306)||(42055805-42055954)
chr1 (102-306)||(18242871-18243076)
chr1 (102-322)||(50914780-50915001)
[»] chr4 (5 HSPs)
chr4 (1-322)||(54602447-54602770)
chr4 (1-320)||(12024777-12025103)
chr4 (102-322)||(39388811-39389032)
chr4 (150-322)||(16347123-16347295)
chr4 (1-70)||(39388698-39388767)
[»] chr6 (8 HSPs)
chr6 (1-318)||(5620224-5620543)
chr6 (102-295)||(19268754-19268948)
chr6 (1-308)||(33523351-33523666)
chr6 (218-320)||(2946139-2946241)
chr6 (167-308)||(33522380-33522521)
chr6 (102-286)||(23058639-23058827)
chr6 (1-73)||(2946289-2946361)
chr6 (1-70)||(19268644-19268713)
[»] chr2 (16 HSPs)
chr2 (1-322)||(31501033-31501357)
chr2 (1-322)||(40612741-40613072)
chr2 (1-272)||(26393702-26393980)
chr2 (104-295)||(4174704-4174896)
chr2 (1-232)||(19508503-19508733)
chr2 (103-306)||(2777064-2777268)
chr2 (138-306)||(34458432-34458600)
chr2 (131-321)||(2119882-2120072)
chr2 (102-322)||(29902151-29902372)
chr2 (130-322)||(15738244-15738436)
chr2 (222-306)||(694860-694944)
chr2 (156-236)||(20725489-20725569)
chr2 (102-308)||(21833398-21833605)
chr2 (1-66)||(15738095-15738160)
chr2 (150-234)||(26172699-26172783)
chr2 (270-322)||(26391544-26391596)
[»] scaffold1043 (2 HSPs)
scaffold1043 (102-322)||(2966-3187)
scaffold1043 (1-70)||(2844-2917)
[»] scaffold0079 (1 HSPs)
scaffold0079 (150-322)||(45566-45738)
[»] scaffold0688 (1 HSPs)
scaffold0688 (102-219)||(5433-5551)
[»] scaffold0097 (1 HSPs)
scaffold0097 (156-236)||(29318-29398)
[»] scaffold0013 (1 HSPs)
scaffold0013 (218-321)||(62861-62964)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 42014359 - 42014037
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||             
T  42014359 aaataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaatatgtcataattatacataacagtaaaaaagtacataaaaaaaaa 42014260  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42014259 ccctaatcataatcaactctgctgcctagcatgcctcggccccctgctccgcctagcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 42014160  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  42014159 atcacctcctggaaaatcttctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatctcggatgatcgtcaatgtgtcag 42014060  T
Q  300 gcatctctccggtatgctcctcc 322  Q
    ||||||||| || ||||||||||    
T  42014059 gcatctctctggcatgctcctcc 42014037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 322
Target Start/End: Original strand, 46526320 - 46526637
Alignment:
Q  4 taatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnntccc 103  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||||||||||||||||         |||    
T  46526320 taatatgaaaggtatgtcggaaaatgtcatacaaataccaaaatgtaaggaacatgtcataattatacgtcacagtaaaaaagtacataaaaaaa--ccc 46526417  T
Q  104 taatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatc 202  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  46526418 taatcataatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtaccggctatccgcatc 46526517  T
Q  203 acctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggca 302  Q
    |||| ||||||||||||||||||||||||||||| || ||| |||||||||||  || ||||||||||||||||  |||||||||||| |||| ||||||    
T  46526518 acctactggacaatctcctctttagtcatctcggcttgcctagccacaatatcgccaactatatgcaccacatcccggatgatcgtcagtgtgtcaggca 46526617  T
Q  303 tctctccggtatgctcctcc 322  Q
    |||| | || ||||||||||    
T  46526618 tctccctggcatgctcctcc 46526637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 6272752 - 6273058
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||||||||| || |||||||||||||||||             
T  6272752 aaataatataaaaagtatgtcggaaaatgtcatacaaataccaaaatgtacgaaacatgtcataattatacatcacagtaaaaaagtacataaaaaaaaa 6272851  T
Q  101 ccct-aatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccg 198  Q
     ||| |||||||||||| | | ||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||| |||    
T  6272852 accttaatcataatcaatcttactgcctagcatgcctcggccccctgcgccgcctggaaatctgatacgtaagggcagggtgaccagtaccggctatccg 6272951  T
Q  199 catcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggca 298  Q
    |||||||||||||||||||||||||||||||||||||  || ||||||||||||||| ||| ||||||||||||||||   ||||||||| |||||| ||    
T  6272952 catcacctcctggacaatctcctctttagtcatctcgtcttgcctggccacaatatcgtcaactatatgcaccacatcccagatgatcgttaatgtgtca 6273051  T
Q  299 ggcatct 305  Q
    |||||||    
T  6273052 ggcatct 6273058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 41964561 - 41964264
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataac---------agtaaaaaagtacat 91  Q
    ||||||||||||| ||| ||| |||||||||||| |||||  |||||||| |||| |||||||||||||| || ||         |||||||||||||||    
T  41964561 aaataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaaaagtacat 41964462  T
Q  92 nnnnnnnntccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccg 190  Q
              | ||||||||||||||||| ||||| ||||||||||| |||||| || || |||||||||||||||||||||| ||||||||||||||||    
T  41964461 aaaaaaag--cttaatcataatcaaccctactgcctagcatgcctcgaccccctgcgtcgtctggcaatctgatacgtaagggcagggcgaccagtaccg 41964364  T
Q  191 gctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtca 290  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| || |||| |||||||||||||| |||||| |||||||||  ||||||||||||    
T  41964363 gctatccgcatcacctcctggaaaatctcctctttagtcatctcggcttgcctgaccacaatatcatcaactatattcaccacatcccggatgatcgtca 41964264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 10554701 - 10554526
Alignment:
Q  131 tgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtca 230  Q
    |||||| | ||||| || ||||||||||| ||||| ||||||| |||||||| |||||  |||| |  |||||||||||||| |||||||||||||||||    
T  10554701 tgcctctggcccctgcgtcgcctggcaatttgataagtaagggcagggcgactagtactagctatctacatcacctcctggataatctcctctttagtca 10554602  T
Q  231 tctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctc 306  Q
    |||||| || ||||||||||||||| ||| | ||||||||||||||  ||||||||||||||||| ||||||||||    
T  10554601 tctcggcttgcctggccacaatatcgtcaccaatatgcaccacatcccggatgatcgtcaatgtgtcaggcatctc 10554526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 31593903 - 31593722
Alignment:
Q  140 cccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttt 239  Q
    ||||| |||||||||| ||||||||| ||||||| |||||||| |||||  |||| ||||||||  |||| ||| |||||||||||||||||||||| ||    
T  31593903 cccctgcgccgcctggaaatctgataagtaagggcagggcgactagtactagctatccgcatcaaatcctagacgatctcctctttagtcatctcggctt 31593804  T
Q  240 tcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctc 321  Q
      || ||||||||||| ||||| || |||||||||||  |||||||||||| |||| |||||||||| | || |||||||||    
T  31593803 ggctagccacaatatcgtcagcaatttgcaccacatcccggatgatcgtcagtgtgtcaggcatctccctggcatgctcctc 31593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 45075572 - 45075708
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggcccc-ctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    |||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| || || || |||||||||||| ||||    
T  45075572 cctaatcataatcaaccctgttgcctagcatgcctcgccccccctacgccgcctggcaatctgatacgtaaggatatggtgatcagtaccggctatccgc 45075671  T
Q  200 atcacctcctggacaatctcctctttagtcatctcgg 236  Q
    |||||||| |||| ||||||||||||| | |||||||    
T  45075672 atcacctcttggataatctcctctttatttatctcgg 45075708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45415310 - 45415241
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||| ||||||||| |||||||||  |||||| |||||||| |||| ||||||||||||||    
T  45415310 aaataatataaaaggtatgtcgggaaatgtcatggaaatacaaaaatgtacggaacatgtcataattata 45415241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 3939996 - 3939876
Alignment:
Q  156 caatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatc 255  Q
    ||||||||||| ||||||||||||||||||||| | | | ||| |||| |||||| || | |||||||||||| |||||||   || ||||||||| ||     
T  3939996 caatctgatacataagggtagggcgaccagtactgccaatccggatcatctcctgcaccagctcctctttagttatctcggcgctcatggccacaacatt 3939897  T
Q  256 atcagctatatgcaccacatc 276  Q
    |||| |||| ||||| |||||    
T  3939896 atcaactatctgcacgacatc 3939876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 41270083 - 41269761
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaa-gtacatnnnnnnnn 99  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || ||||||||||| ||| ||            
T  41270083 aaataatataaaaggtatgtcggaaaatgtcatataaataccaaaatgtacggaacatgtcataattatacatcacagtaaaaaaagtaaataaaaaaaa 41269984  T
Q  100 tccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccg 198  Q
     |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  41269983 -ccctaatcataatcaaccctgctgcctagcatgccttggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccg 41269885  T
Q  199 catcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggca 298  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |||| ||    
T  41269884 catcacctcttggacaatctcctctttagtcatctcggtttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtca 41269785  T
Q  299 ggcatctctccggtatgctcctcc 322  Q
    |||||||||| || ||||||||||    
T  41269784 ggcatctctctggcatgctcctcc 41269761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 44115820 - 44116124
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||| || ||||| |||||||||||             
T  44115820 aaataatataaag-gtatgttggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaag 44115918  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    || |||||| |||||||||| ||||| ||||||| || ||||||| |||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||    
T  44115919 cc-taatcacaatcaaccctactgcctagcatgcatcagccccctgcgccacctagcaatctgatacgtaagggcagggcgaccggtaccggctatccgc 44116017  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||    
T  44116018 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcctagatgatcgtcagtgtgtcag 44116117  T
Q  300 gcatctc 306  Q
    || ||||    
T  44116118 gcgtctc 44116124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 103 - 322
Target Start/End: Original strand, 42095767 - 42095987
Alignment:
Q  103 ctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcat 201  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||    
T  42095767 ctaatcataatgaaccttgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccaataccgactatccgcat 42095866  T
Q  202 cacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggc 301  Q
    ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||  |||||||||||||||| ||||||||||||  ||| ||| |    
T  42095867 cacctcctggacaatctcctctttagtcatctcggcttgcctagccacaatatcatcaaatatatgcaccacatctcggatgatcgtcagcgtgtcagac 42095966  T
Q  302 atctctccggtatgctcctcc 322  Q
    || |||| || ||||||||||    
T  42095967 atttctctggcatgctcctcc 42095987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 322
Target Start/End: Original strand, 8317041 - 8317262
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||||| ||||||||||||| || |||||| ||| ||| | | |||||||||||||||||||| ||||||| |||||||| ||||   |||| |||||    
T  8317041 cctaatcacaatcaaccctgctacctagcatgtctctgcctcatgcgccgcctggcaatctgataagtaagggcagggcgactagtagtagctatccgca 8317140  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||||||||||||||||||||| |||||| |||||||||| | ||||||||||||| ||||| ||||||||||||||  |||||||||||| |||| || |    
T  8317141 tcacctcctggacaatctcctatttagtgatctcggtttgcttggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtcaag 8317240  T
Q  301 catctctccggtatgctcctcc 322  Q
    |||||| | || ||||||||||    
T  8317241 catctccctggcatgctcctcc 8317262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 131 - 322
Target Start/End: Original strand, 20477648 - 20477839
Alignment:
Q  131 tgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtca 230  Q
    |||||| ||||||| |||||||| ||||| ||||| ||||||| |||||||| |||||  |||| |||||||||||||||||| ||||||||||||||||    
T  20477648 tgcctctgccccctgcgccgcctcgcaatatgataagtaagggcagggcgactagtactagctatccgcatcacctcctggacgatctcctctttagtca 20477747  T
Q  231 tctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    ||||||  | ||||||||||||||||||||| ||||||||||||||    |||||||||| |||| |||||||||| | || ||||||||||    
T  20477748 tctcggcatgcctggccacaatatcatcagcaatatgcaccacatcccatatgatcgtcagtgtgtcaggcatctccctggcatgctcctcc 20477839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 18701199 - 18701391
Alignment:
Q  130 atgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtc 229  Q
    ||||||| ||||||| ||  |||||||||||||||||||||||| ||||||||| |||| | | | ||| ||||||||||  ||| | ||||||||||||    
T  18701199 atgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctcctaaacagtatcctctttagtc 18701298  T
Q  230 atctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    |||| |    |||| | |||||||| ||||||||| |||||||||||    |||||||||| |||| |||||||||||| || ||||||||||    
T  18701299 atcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcaggcatctctctggcatgctcctcc 18701391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18701051 - 18701116
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataat 66  Q
    ||||||||||||| ||||||  |||||||||||| |||||| |||||||| | || ||||||||||    
T  18701051 aaataatataaaaggtatgtacgaaaatgtcatagaaatactaaaatgtacgaaacatgtcataat 18701116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42095658 - 42095727
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||  ||||||| |||||||||||| |||||  |||||||| |||| ||||||| ||||||    
T  42095658 aaataatataaatggtatgtcagaaaatgtcatagaaataataaaatgtacggaacatgtcattattata 42095727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 48165024 - 48164707
Alignment:
Q  3 ataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnntcc 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||  || |||||||||||||||||         ||    
T  48165024 ataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatc-atcacagtaaaaaagtacataaaaaaa--cc 48164928  T
Q  103 ctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcat 201  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  48164927 ctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcgccgcctgacaatctgatacgtaagggcagggcgaccagtaccggctatccgcat 48164828  T
Q  202 cacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggc 301  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||| ||  |    
T  48164827 cacctcctggacaatatcctctttagtcatctcggctttcctggtcacaatatcatcagttatatgcaccacatctcggatgatcgtcagtgtgtcaaac 48164728  T
Q  302 atctctccggtatgctcctcc 322  Q
    ||||||| |||||||||||||    
T  48164727 atctctctggtatgctcctcc 48164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 177722 - 178043
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||  | ||| | |||||||||||             
T  177722 aaataatataaaaggtgtgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatactttacattcaaaaagtacataaaaaaaag 177821  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
     | |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  177822 tc-taatcataatcaaccctgttgcctagcatgcctcggccccctatgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgc 177920  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||    
T  177921 atcacctcctggacaatcttctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtcag 178020  T
Q  300 gcatctctccggtatgctcctcc 322  Q
    ||||||||  || ||||||||||    
T  178021 gcatctctttggcatgctcctcc 178043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 18942898 - 18943216
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| | |||||||||             
T  18942898 aaataatacaaaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattataaatcacagtcacaaagtacataaaaaaaaa 18942997  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    |||||||||||||||||||||||||| ||||||||||| |||||| | |||||| ||||| ||||||||||||| |||||||||||||||||||| |||     
T  18942998 ccctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctcgcaatttgatacgtaagggcagggcgaccagtaccggctatccgt 18943097  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||   |||||||| ||| |||| ||     
T  18943098 atcacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcaggtatatgcaccacatacaggatgatcatcagtgtgtcaa 18943197  T
Q  300 gcatctctccggtatgctc 318  Q
    ||||||||| || ||||||    
T  18943198 gcatctctctggcatgctc 18943216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 45034894 - 45034591
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||||||| || | |||||||||||||||             
T  45034894 aaataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatatacggaacatgtcataattatacatcagagtaaaaaagtacataaaaaaa-- 45034797  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||  |||||| ||||||||| || ||||    
T  45034796 ccctaatcataatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatttgatacgtaagggcggggcgatcagtaccggatatccgc 45034697  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    |||||||||||||||||||  || ||||||||||| | || ||||||||||||||||||||||||||||||||| ||  ||||||||| || |||| |||    
T  45034696 atcacctcctggacaatcttttcattagtcatctcagcttgcctggccacaatatcatcagctatatgcaccacctcccggatgatcgccagtgtgtcag 45034597  T
Q  300 gcatct 305  Q
    ||||||    
T  45034596 gcatct 45034591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 52561204 - 52560990
Alignment:
Q  109 ataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctc 207  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  52561204 ataatcaaccctactgcctagcatgcctcggccccctgcgccgcctgacaatctgttacgtaagggcagggcgaccagtaccggctatccgcatcacctc 52561105  T
Q  208 ctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctct 307  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||  ||||||| |||| |||| ||| ||||||     
T  52561104 ctggacaatctcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgattgtcagtgtgtcagacatctcc 52561005  T
Q  308 ccggtatgctcctcc 322  Q
    | || ||||||||||    
T  52561004 ctggcatgctcctcc 52560990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 18912064 - 18911880
Alignment:
Q  3 ataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacat-nnnnnnnntc 101  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| ||||||| |||               
T  18912064 ataatataaaaggtatgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagt-aaaaagtgcataaaaaaaaaaa 18911966  T
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagt 186  Q
    ||||||||||||||||| ||||||| ||||||| | |||||||| |||||||||||||||||||| ||||||| ||||||||||||    
T  18911965 cctaatcataatcaaccttgctgcctagcatgctttggccccctgcgccgcctggcaatctgatatgtaagggcagggcgaccagt 18911880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 55150928 - 55150764
Alignment:
Q  131 tgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtca 230  Q
    |||||| ||||||| |||||||||||||||||||| ||||||| |||||||| |||||  | || |||||||||||||| ||| |||||||||||||||     
T  55150928 tgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagttatccgcatcacctcctagacgatctcctctttagtcc 55150829  T
Q  231 tctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtg 295  Q
    |||||| || |||| ||| |||||| ||||| ||||||||||||||| |||||||| ||| ||||    
T  55150828 tctcggcttgcctgaccataatatcgtcagcaatatgcaccacatctcggatgatcatcagtgtg 55150764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 18908242 - 18908115
Alignment:
Q  181 accagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttgg 280  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| || |||||||||| |||| ||||||||||||||||||||   |    
T  18908242 accagtaccggctatccgcatcacctcctggacaatctcctctttaggcatttcggcttgcctggccacagtatcgtcagctatatgcaccacatcccag 18908143  T
Q  281 atgatcgtcaatgtggcaggcatctctc 308  Q
    |||||| ||| |||| ||||||||||||    
T  18908142 atgatcatcagtgtgtcaggcatctctc 18908115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 322
Target Start/End: Complemental strand, 9220 - 9089
Alignment:
Q  191 gctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtca 290  Q
    |||| |||||||||||||||||||||||||| | || ||||||||| || ||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  9220 gctatccgcatcacctcctggacaatctcctttctactcatctcggcttgcctggccacaatatcatcagcaatatgcaccacatcccggatgatcgtca 9121  T
Q  291 atgtggcaggcatctctccggtatgctcctcc 322  Q
     |||| ||||||| || | || ||||||||||    
T  9120 ctgtgtcaggcatttccctggcatgctcctcc 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 54315312 - 54315504
Alignment:
Q  130 atgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtc 229  Q
    ||||||| |||| || ||| ||||||||| |||||||||||||| |||||||||| ||  | | | ||  ||| ||| ||  | |||||||| | |||||    
T  54315312 atgcctctgccctctgcgctgcctggcaaactgatacgtaagggcagggcgaccaatattgtcaatcctaatcgccttctaaataatctcctatgtagtc 54315411  T
Q  230 atctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    |||| |    ||||||||||||||| |||| |||| |||||||||||   |||||||||||||||| |||||||||||| || ||||||||||    
T  54315412 atcttgccgctcctggccacaatattatcatctatctgcaccacatccctgatgatcgtcaatgtgtcaggcatctctctggcatgctcctcc 54315504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 10901 - 10817
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccag 185  Q
    |||||| ||||||| |||||||||| | | |||||| ||||||| ||||||||| |||||||||| ||||||| |||||||||||    
T  10901 cctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctgacaatctgataagtaagggcagggcgaccag 10817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 308
Target Start/End: Original strand, 13825446 - 13825653
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||| |||||||||||| ||||| |   |||||  ||||||| ||| ||||||||||| ||||| |||||| |||||||| |||||   | | ||  |    
T  13825446 cctaatgataatcaaccctactgcctatggtgcctatgccccctgcgctgcctggcaatccgatacataagggcagggcgactagtactatcaatccaaa 13825545  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||| |||||| || | |||| |||||||||||||||   || | ||||||| || ||||||||| ||||| |||||   ||||||||| | |||| ||||    
T  13825546 tcatctcctgcaccagctccgctttagtcatctcggcactcatagccacaacattatcagctatctgcacgacatccctgatgatcgtaagtgtgtcagg 13825645  T
Q  301 catctctc 308  Q
    ||||||||    
T  13825646 catctctc 13825653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 52561323 - 52561254
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||| ||| ||| |||||||||||| |||||  |||||||| |||| ||||||||||||||    
T  52561323 aaataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacggaacatgtcataattata 52561254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23585293 - 23585225
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||  |||||| ||||||||||||| |||||| |||||||| |||| |||||||| |||||    
T  23585293 aaataatataaag-gtatgtaggaaaatgtcatagaaatacaaaaatgtacggaacatgtcatagttata 23585225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23600116 - 23600048
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||  |||||| ||||||||||||| |||||| |||||||| |||| |||||||| |||||    
T  23600116 aaataatataaag-gtatgtaggaaaatgtcatagaaatacaaaaatgtacggaacatgtcatagttata 23600048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 10825615 - 10825919
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || ||||| |||||||||||             
T  10825615 aaataatataaag-gtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaag 10825713  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    || |||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  10825714 cc-taatcacaatcaaccctactgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgc 10825812  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||  |||||||||||| |||| |||    
T  10825813 atcacctcctggacaatctcctctttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcag 10825912  T
Q  300 gcatctc 306  Q
    |||||||    
T  10825913 gcatctc 10825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 7263167 - 7262837
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataac--------agtaaaaaagtacatn 92  Q
    ||||||||||||| |||||||||||||||||||| |||||  |||||||| |||| |||||||||||||| || ||        ||| |||||||||||     
T  7263167 aaataatataaaaggtatgtcggaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacata 7263068  T
Q  93 nnnnnnntccctaatcataatcaaccctgctgcc-agcatgcctcggccccc-tacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccg 190  Q
            || || |||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||    
T  7263067 aaaaaaagcctta-tcataatcaaccctgctgcctagcatgcctcggcccccctgcgccgcctggtaatctgatacgtaagggaagggcgaccagtaccg 7262969  T
Q  191 gctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtca 290  Q
    |||| ||||||||||||||||||||| |||||||||||||||| || || |||| |||||||||| ||||||||||||||||||||| |||||||||||     
T  7262968 gctatccgcatcacctcctggacaatatcctctttagtcatcttggcttgcctgaccacaatatcgtcagctatatgcaccacatctcggatgatcgtcg 7262869  T
Q  291 atgtggcaggcatctctccggtatgctcctcc 322  Q
     ||||  ||||||||||| || ||||||||||    
T  7262868 gtgtgttaggcatctctctggcatgctcctcc 7262837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 102 - 306
Target Start/End: Complemental strand, 19876703 - 19876498
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||||||||| |||||| ||||  ||||||||||| ||| || ||| |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  19876703 cctaatcataattaaccctactgcgtagcatgcctcgcccctctgcgctgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgca 19876604  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||  |||||||||| | |||| ||||    
T  19876603 tcacctcctagacaatctcctctttagtcatctcgacttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcagg 19876504  T
Q  301 catctc 306  Q
    ||||||    
T  19876503 catctc 19876498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 322
Target Start/End: Original strand, 37980261 - 37980481
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||| ||||||| |||||||| | | | |||||| | |||||||||||||||||||||||||| ||||||| |||||||| ||||| | ||| | |||    
T  37980261 cctaataataatcagccctgctgtctaccctgcctctgacccctacgccgcctggcaatctgataagtaagggcagggcgactagtactg-ctatcagca 37980359  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||||  |||||||||||| |||| |||     
T  37980360 tcacctcgtggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtcaga 37980459  T
Q  301 catctctccggtatgctcctcc 322  Q
    |||||| | || ||||||||||    
T  37980460 catctccctggcatgctcctcc 37980481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 141 - 306
Target Start/End: Complemental strand, 24169627 - 24169462
Alignment:
Q  141 ccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggtttt 240  Q
    |||| ||||||||| ||||||||||  |||||| ||  |||| |||||  |||| |||||||||||||||||||||||||| |||||||||||||| ||     
T  24169627 ccctgcgccgcctgacaatctgataattaagggcagtacgactagtactagctatccgcatcacctcctggacaatctcctttttagtcatctcggcttg 24169528  T
Q  241 cctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctc 306  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  24169527 cctggccacaatatcgtcagcaatatgcaccacatcttggatgatcgtcagtgtgtcaggcatctc 24169462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 23067300 - 23067167
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||||||||||||| ||  |||| ||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||    
T  23067300 cctaatcataatcaactctattgcctagcttgcctcggccccctgcgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatcccca 23067201  T
Q  201 tcacctcctggacaatctcctctttagtcatctc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  23067200 tcacctcctggacaatctcctctttagtcatctc 23067167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19876815 - 19876746
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||  ||| ||| |||||||||||| |||||  ||||||||||||  ||||||||||||||    
T  19876815 aaataatataaacggtacgtctgaaaatgtcatagaaataagaaaatgtatggagcatgtcataattata 19876746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23067411 - 23067342
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||| ||| |||  ||||||||||| |||||  |||||||| |||| ||||||||||||||    
T  23067411 aaataatataaaaggtacgtccaaaaatgtcatagaaataagaaaatgtacggaacatgtcataattata 23067342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 31387748 - 31387430
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||| || ||||| ||||||||| |             
T  31387748 aaataatataaag-gtatgtcggaaaatgtcatagaaatatcaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacgtaaaaaag-- 31387652  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
     |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |    
T  31387651 -cctaatcacaatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccac 31387553  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||    
T  31387552 atcacctcctggacagtctcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcag 31387453  T
Q  300 gcatctctccggtatgctcctcc 322  Q
    ||||||| | || ||||||||||    
T  31387452 gcatctccctggcatgctcctcc 31387430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 27105925 - 27106230
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||| | || ||||||||||||||| | ||||| ||||| |||||             
T  27105925 aaataatataaag-gtatgtcggaaaatgtcatagaaataccaaaatgtacgaaacatgtcataattatatgtcacagtcaaaaaatacataaaaaaaaa 27106023  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
     |||||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||    
T  27106024 gcctaatcacaatcaaccatgctgcctagcatgcctcggccccctacgccgcctgacaatctgatacataagggcagggcgaccagtaccggctatccgc 27106123  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||  |||||||||||| |||| |||    
T  27106124 atcacctcctggaaaatctcctctttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccatatcccggatgatcgtcagtgtgtcag 27106223  T
Q  300 gcatctc 306  Q
     ||||||    
T  27106224 acatctc 27106230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 4911837 - 4912156
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || ||| | |||||||||||             
T  4911837 aaataatataaag-gtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacaatcaaaaagtacataaaaaaag- 4911934  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
     |||||||| |||||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||  |||||| |||||||||| ||||||||||||||    
T  4911935 -cctaatcacaatcaaccatgctgcctagtatgcctcagccccctgcgccgcctggcaatctgatatataagggcagggcgaccaataccggctacccgc 4912033  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| | |||||||||||||||  |||||||||||| |||| |||    
T  4912034 atcacctcctggacaatcttctctttagtcatctcggcttgcctggccacaatatcatcggttatatgcaccacatcccggatgatcgtcagtgtgtcag 4912133  T
Q  300 gcatctctccggtatgctcctcc 322  Q
    ||||||  | || ||||||||||    
T  4912134 gcatcttcctggcatgctcctcc 4912156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 46192193 - 46192497
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| ||||| |||||        |    
T  46192193 aaataatataaaaagtatgttgaaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaattacataaaaaaagt 46192292  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    |  ||||||||||||| | ||||||| || |||||||||||||||||| |||||| ||||||||||| |||||| |||||||| |||||||| || ||||    
T  46192293 c--taatcataatcaaacgtgctgcctagaatgcctcggccccctacgtcgcctgacaatctgatacataaggggagggcgactagtaccggttatccgc 46192390  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||  |||||||||| | |||| |||    
T  46192391 atcacctccaggacaatctcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgatcgtgagtgtgtcag 46192490  T
Q  300 gcatctc 306  Q
     ||||||    
T  46192491 acatctc 46192497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 42463524 - 42463827
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||| ||||||| ||||| ||||||||||||||| | || |||||||||||||| || ||||| |||||||||||             
T  42463524 aaataatataaag-gtatgttggaaaatatcatagaaataccaaaatgtacgaaacatgtcataattatacatcacagtgaaaaagtacataaaaaaag- 42463621  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
     |||||||  |||||||| ||| ||| ||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||    
T  42463622 -cctaatcgcaatcaaccatgcggcctagcatgcctcggctccctgcgccgcctgacaatctaatacgtaagggcagggcgaccagtaccggctatccgc 42463720  T
Q  200 atcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcag 299  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||||||||| | |||| |||    
T  42463721 atcacctcctggacaatctcctcgttagtcatctcggctttcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcag 42463820  T
Q  300 gcatctc 306  Q
     ||||||    
T  42463821 acatctc 42463827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 15291479 - 15291809
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataac---------agtaaaaaagtacat 91  Q
    ||||||||||||| ||||||| |||||||||||| |||||  |||||||| |||| |||||||||||||| || ||         ||||||| |||||||    
T  15291479 aaataatataaaaggtatgtccgaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaatagtacat 15291578  T
Q  92 nnnnnnnntccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccg 190  Q
             || ||||||||||||||| | ||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||| |||||    
T  15291579 aaaaaaaagcc-taatcataatcaaccttactgcctagcatgcctcggccctctgcgccgcctggcaatctgatacgtaagggcaggacgaccaataccg 15291677  T
Q  191 gctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtca 290  Q
    |||| ||| |||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  15291678 gctatccgtatcacctcctggacaatctcctatttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtca 15291777  T
Q  291 atgtggcaggcatctctccggtatgctcctcc 322  Q
     |||| ||| |||||| | || ||||||||||    
T  15291778 gtgtgtcagacatctccctggaatgctcctcc 15291809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 157 - 306
Target Start/End: Original strand, 42055805 - 42055954
Alignment:
Q  157 aatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatca 256  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  42055805 aatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagctttcttggccacaatatca 42055904  T
Q  257 tcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctc 306  Q
     || |||||||||| ||||| ||||||||||||| |||| ||||||||||    
T  42055905 ccaactatatgcacaacatcctggatgatcgtcagtgtgtcaggcatctc 42055954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 306
Target Start/End: Complemental strand, 18243076 - 18242871
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||| ||||||| |||||||||| | | |||||| ||||||| |||||||||||||||||||| ||||||| |||||||| |||||  | || | | |    
T  18243076 cctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagatatctgta 18242977  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||||||||| ||| ||||||||||||||||| |||| || ||||||||||||||| ||||| |||||||||| |||  |||||||||||| |||| ||||    
T  18242976 tcacctcctagacgatctcctctttagtcatatcggcttgcctggccacaatatcgtcagcaatatgcaccagatccgggatgatcgtcagtgtgtcagg 18242877  T
Q  301 catctc 306  Q
    ||||||    
T  18242876 catctc 18242871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 322
Target Start/End: Complemental strand, 50915001 - 50914780
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||| ||||||| |||||||||| | | | |||| | ||||| ||||||||| |||| ||||| ||||||| |||||| | |||||  |||| |||||    
T  50915001 cctaataataatcagccctgctgcctaccctacctctggcccctgcgccgcctgacaatttgataagtaagggcagggcggctagtactagctatccgca 50914902  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||||||||||||| ||||||||||||||| |||||| || ||||||||||||||| ||| | ||||||||||||||| |||||||| ||| |||| ||||    
T  50914901 tcacctcctggacgatctcctctttagtcgtctcggcttgcctggccacaatatcgtcaacaatatgcaccacatctcggatgatcctcagtgtgtcagg 50914802  T
Q  301 catctctccggtatgctcctcc 322  Q
    |||||| | || ||||||||||    
T  50914801 catctccctggcatgctcctcc 50914780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 54602447 - 54602770
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaa-gtacatnnnnnnnn 99  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||             
T  54602447 aaataatataaaaggtatgtcagaaaatgtcatacaaataccaaaatgtatggaacatgtcataattatacatcacagtaaaaaaagtacaaaaaaaaaa 54602546  T
Q  100 tccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccg 198  Q
     || ||||  ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||  | | | |    
T  54602547 accttaattttaatcaaccctgctgcctagcatgcctcggccccctgcgccgcctggcaatctaatacgtaagggcagggcgaccagtaccaacaatctg 54602646  T
Q  199 catcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggca 298  Q
    |||||||||||||||||| ||||||||||||||||||| || |||  |||||||||| ||||||||||||||||||||  |||||||||||| |||| ||    
T  54602647 catcacctcctggacaatttcctctttagtcatctcggcttgcctaaccacaatatcgtcagctatatgcaccacatcccggatgatcgtcagtgtgtca 54602746  T
Q  299 ggcatctctccggtatgctcctcc 322  Q
    |||||||||| || ||||||||||    
T  54602747 ggcatctctctggcatgctcctcc 54602770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 12024777 - 12025103
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataac--------agtaaaaaagtacatn 92  Q
    ||||||||||||| |||||||||||||||||||| |||||  ||||||||| ||| |||||||||||||| || ||        ||| |||||||||||     
T  12024777 aaataatataaaaggtatgtcggaaaatgtcatataaataaaaaaatgtatagaacatgtcataattatacatcaccatgatcaagtcaaaaagtacata 12024876  T
Q  93 nnnnnnntccctaatcataatcaaccctgctgccag-catgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccgg 191  Q
             |||||||||| | |||| |||| || | ||||||||||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||    
T  12024877 aaaaaat--cctaatcatagttaaccatgcttcctggcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccgg 12024974  T
Q  192 ctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaa 291  Q
     || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||| |||     
T  12024975 gtatccgcatcacctcctggacaatctcctctttagtcatctcggctttcctggccacaatatcgtcatctatatgcaccacatctcggatgatcatcag 12025074  T
Q  292 tgtggcaggcatctctccggtatgctcct 320  Q
    |||| ||| |||||||| || ||||||||    
T  12025075 tgtgccagacatctctctggcatgctcct 12025103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 102 - 322
Target Start/End: Original strand, 39388811 - 39389032
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    ||||||||||||||||||| ||||| |||||||||  |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  39388811 cctaatcataatcaaccctactgcctagcatgccttagccccctacgccacctggcaatctgatacgtaaggtcagggcgaccagtaccggctatccgca 39388910  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    |||||||||| ||||||||||||||||||||| ||| || |||| ||||||||||||||| |||||| ||||||||  |||||||||||| |||| ||      
T  39388911 tcacctcctgaacaatctcctctttagtcatcccggcttgcctgaccacaatatcatcagttatatgtaccacatcccggatgatcgtcagtgtgtcata 39389010  T
Q  301 catctctccggtatgctcctcc 322  Q
    |||||| | || ||||||||||    
T  39389011 catctcactggcatgctcctcc 39389032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 150 - 322
Target Start/End: Original strand, 16347123 - 16347295
Alignment:
Q  150 gcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccac 249  Q
    ||||||||||| |||| ||||||| | |||||||||||  | | | ||  ||||||||||| ||||||||||||||||||||||||    ||||||||||    
T  16347123 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 16347222  T
Q  250 aatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    ||||||||||||||| ||||||| ||   |||||||||||| |||| ||| |||||||| || ||||||||||    
T  16347223 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcagacatctctctggcatgctcctcc 16347295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39388698 - 39388767
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||| ||| ||| |||||||||||| |||||  |||||||| | || ||||||||||||||    
T  39388698 aaataatataaaaggtacgtccgaaaatgtcatagaaataagaaaatgtacgaaacatgtcataattata 39388767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 5620543 - 5620224
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||| || | |||||||||||||||             
T  5620543 aaataatataaaaagtatgtcagaaaatgtcatacaaatatcaaaatgtacggaatgtgtcataattatacatcatagtaaaaaagtacataaaaaaaaa 5620444  T
Q  101 c-cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccg 198  Q
      ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||| |||||| |||    
T  5620443 agcctaatcataatcaaccctgctgcctagcatgcctcggctccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtatcggctatccg 5620344  T
Q  199 catcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggca 298  Q
    ||||||||||||||||||||| |||||||||||||||| ||  ||| |||||||||| ||| ||||||||||||||||| |||||||| ||| |||| ||    
T  5620343 catcacctcctggacaatctcttctttagtcatctcggcttgtctgtccacaatatcgtcaactatatgcaccacatctcggatgatcatcagtgtgtca 5620244  T
Q  299 ggcatctctccggtatgctc 318  Q
    ||||| |||| || ||||||    
T  5620243 ggcatatctctggcatgctc 5620224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 102 - 295
Target Start/End: Original strand, 19268754 - 19268948
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||||| |||||||||||||||| | |||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||| | | |    
T  19268754 cctaatcagaatcaaccctgctgcctaccatgcctctgccccctgcgccgcctggcaatctgatacgtatgggcagggcgaccagtactggctatctgaa 19268853  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtg 295  Q
    ||||||| |||||||||||||||||| ||||||||   ||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  19268854 tcacctcttggacaatctcctctttaatcatctcgtcgttccttgccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtg 19268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33523666 - 33523351
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaa---------aaaagtacat 91  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||| |||| |||||||||||||| || ||  |||         ||||||||||    
T  33523666 aaataatataaaaggtatgtcggaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccataatcatagtccaaaagtacat 33523567  T
Q  92 nnnnnnnntccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccg 190  Q
              ||||||||||||||||||| ||| | | | |||| | ||||||| |||||||| ||||||||||| ||||||| |||||| ||||||| |    
T  33523566 aaaaaaag--cctaatcataatcaaccctactgtctaccctgccgctgccccctgcgccgcctagcaatctgatatgtaagggcagggcggccagtactg 33523469  T
Q  191 gctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtca 290  Q
    ||||  || ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  33523468 gctattcgtatcacctcctggacaatctcctccttagtcatctcgtctttcctggccacaatatcatcagttatatgcaccacatcccggatgatcgtca 33523369  T
Q  291 atgtggcaggcatctctc 308  Q
     |||| ||| ||||||||    
T  33523368 gtgtgtcagacatctctc 33523351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 2946241 - 2946139
Alignment:
Q  218 tcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgct 317  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||  ||||||| |||| |||| |||||||||| | || |||||    
T  2946241 tcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgattgtcagtgtgtcaggcatctccctggcatgct 2946142  T
Q  318 cct 320  Q
    |||    
T  2946141 cct 2946139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 308
Target Start/End: Original strand, 33522380 - 33522521
Alignment:
Q  167 gtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatat 266  Q
    ||||||| | |||||| ||||||| |||  ||||| |||||||||| |||||||| |||||||   ||||  || ||||| |||||||||||||||||||    
T  33522380 gtaagggcaaggcgactagtaccgactattcgcataacctcctggaaaatctcctttttagtcccgtcggcctttctggcaacaatatcatcagctatat 33522479  T
Q  267 gcaccacatcttggatgatcgtcaatgtggcaggcatctctc 308  Q
    ||||||||||| |||||||| |||||||| ||| ||| ||||    
T  33522480 gcaccacatctcggatgatcttcaatgtgtcagacatatctc 33522521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 286
Target Start/End: Complemental strand, 23058827 - 23058639
Alignment:
Q  102 cctaatcataatcaaccctgctgccagc-atgcctcggccccctacgccgcctggcaatctgatacgtaagggtag---ggcgaccagtaccggctaccc 197  Q
    |||||| | ||||||||||||||||  | ||||||| ||| ||| |||  ||||| |||| |||||||||||| ||   |||||||||||  | | | ||    
T  23058827 cctaataagaatcaaccctgctgcctacgatgcctctgccacctgcgctacctggaaatccgatacgtaagggcagcagggcgaccagtagtgccaatcc 23058728  T
Q  198 gcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatc 286  Q
    | | |||||| || |||||||||||||||||||||||     || |||||||||||||||||||||| |||||||||||| ||||||||    
T  23058727 gaaacacctcatgaacaatctcctctttagtcatctcaccgctcatggccacaatatcatcagctatctgcaccacatctcggatgatc 23058639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2946361 - 2946289
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatat 73  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||| || |||| |||||||||||||||||    
T  2946361 aaataatataaaaggtatgtcgggaaatgtcatagaaataccaaaatatacggaacatgtcataattatatat 2946289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19268644 - 19268713
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||| |||  || |||||||||||| |||||| |||||||| |||| ||||||||||||||    
T  19268644 aaataatataaaaggtacatccgaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattata 19268713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 31501033 - 31501357
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || | ||| |||||||||||             
T  31501033 aaataatataaag-gtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcatagtcaaaaagtacataaaaaaaaa 31501131  T
Q  101 c---cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacc 196  Q
        |||||||| |||||||||||||||| |||||||||||||||||| || ||||||  ||||||||||||||||| | |||||||||||||||||| |    
T  31501132 aaagcctaatcacaatcaaccctgctgcctagcatgcctcggccccctgcgtcgcctgaaaatctgatacgtaagggcaaggcgaccagtaccggctatc 31501231  T
Q  197 cgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtgg 296  Q
    | |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||  |||| ||||||| | ||     
T  31501232 cacatcacctcctggacaatatcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggataatcgtcagtttgt 31501331  T
Q  297 caggcatctctccggtatgctcctcc 322  Q
    |||||||||||| || ||||||||||    
T  31501332 caggcatctctctggcatgctcctcc 31501357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 40612741 - 40613072
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaa-tgtatggaatatgtcataattatatataac---------agtaaaaaagtaca 90  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||| || |          ||| ||||||||||    
T  40612741 aaataatataaaaggtatgtcggaaaatgtcatagaaatacgaaaaatgtatggaacatgtcataattatacatcatcatcatcatagtcaaaaagtaca 40612840  T
Q  91 tnnnnnnnntccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtacc 189  Q
    |         || ||||||||||||||||||||||| | |||||||| ||||||| |||| |||| |||||||||||||| ||| ||||||| |||||||    
T  40612841 taaaaaaaagcc-taatcataatcaaccctgctgcctaccatgcctctgccccctgcgccacctgacaatctgatacgtacgggcagggcgatcagtacc 40612939  T
Q  190 ggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtc 289  Q
    ||| | |||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||| ||||||||| ||||||||  |||||||||||    
T  40612940 ggccatccgcatcacctcctagacaatctcctctttagtcatctcggcttgcttggccacaatatcattagctatatgaaccacatcccggatgatcgtc 40613039  T
Q  290 aatgtggcaggcatctctccggtatgctcctcc 322  Q
    | |||| |||||||||||| || ||||||||||    
T  40613040 agtgtgtcaggcatctctctggcatgctcctcc 40613072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 26393980 - 26393702
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataac--------agtaaaaaagtacatn 92  Q
    |||||||||||||||||||||| ||||||||||| |||||  ||||||||||||| |||||||||||||| || ||        ||| |||||||||||     
T  26393980 aaataatataaaatgtatgtcgaaaaatgtcatagaaataaaaaaatgtatggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacata 26393881  T
Q  93 nnnnnnntccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccgg 191  Q
             ||||||||||||||||||||||| | |||||||||||||||||| || |||| || ||||||||||||||||| ||||| |||||||| ||    
T  26393880 taaaaag--cctaatcataatcaaccctgctgactagcatgcctcggccccctgcgtcgccgggtaatctgatacgtaagggcagggcaaccagtactgg 26393783  T
Q  192 ctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcacca 272  Q
    ||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  26393782 ctatccacatcacctcctggacaatctcctctttagtcatctcggattgcctggccacaatatcgtcagctatatgcacca 26393702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 104 - 295
Target Start/End: Complemental strand, 4174896 - 4174704
Alignment:
Q  104 taatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatc 202  Q
    |||| |||||||||||| ||||| ||||| ||||| ||| |  |||||| |||||||||||||||||| || |||||||||||||||||||| |||||||    
T  4174896 taattataatcaaccctactgcctagcatacctcgacccacagcgccgcttggcaatctgatacgtaacggcagggcgaccagtaccggctatccgcatc 4174797  T
Q  203 acctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtg 295  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  4174796 acctcctggacaatctcctctttagtcatctcggcttgtctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtg 4174704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 19508733 - 19508503
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataattatatataacagtaaaaaagtacatnnnnnnnnt 100  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || |||||  ||||||||||             
T  19508733 aaataatataaag-gtatgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtccaaaagtacataaaaaaaaa 19508635  T
Q  101 ccctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgc 199  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||  | | |||||||||||||||| ||||    
T  19508634 ccctaatcataatcaacactgctgcctagcatgccttggccccctgtgccgcctggcaatctgatacgtaaggacatg-cgaccagtaccggctatccgc 19508536  T
Q  200 atcacctcctggacaatctcctctttagtcatc 232  Q
    |||||||||||||||||||||||||||||||||    
T  19508535 atcacctcctggacaatctcctctttagtcatc 19508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 103 - 306
Target Start/End: Complemental strand, 2777268 - 2777064
Alignment:
Q  103 ctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcat 201  Q
    ||||| ||||||| || ||||||| | | |||||| ||||||| |||||||||| ||||||||| ||||||| ||||| || |||||  |||| ||||||    
T  2777268 ctaataataatcagccatgctgcctaccctgcctctgccccctgcgccgcctggaaatctgataagtaaggggagggccactagtactagctatccgcat 2777169  T
Q  202 cacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggc 301  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| | ||||||| ||||||  ||||||||||||||||| |||||    
T  2777168 cacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcaacaatatgcatcacatcccggatgatcgtcaatgtgtcaggc 2777069  T
Q  302 atctc 306  Q
    |||||    
T  2777068 atctc 2777064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 306
Target Start/End: Complemental strand, 34458600 - 34458432
Alignment:
Q  138 gccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggt 237  Q
    ||||||| |||||||||||||||||||| ||||||| |||| |||| ||||| |||| | | |||||||||||||||||| |||||||| |||||||||     
T  34458600 gccccctgcgccgcctggcaatctgatatgtaagggcagggagaccggtacctgctatctgtatcacctcctggacaatcacctctttaatcatctcggc 34458501  T
Q  238 tttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctc 306  Q
    || ||||||||||||||||||||||||||||||||||||  | |||||||||| |||| ||||||||||    
T  34458500 ttgcctggccacaatatcatcagctatatgcaccacatcccgaatgatcgtcagtgtgtcaggcatctc 34458432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 131 - 321
Target Start/End: Original strand, 2119882 - 2120072
Alignment:
Q  131 tgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtca 230  Q
    |||||| ||||||| |||||||||  ||||||||| ||||||| |  ||||| |||||  |||| |||||||||||||||||||||||||||||||||||    
T  2119882 tgcctctgccccctgcgccgcctgaaaatctgataagtaagggcaacgcgactagtactagctatccgcatcacctcctggacaatctcctctttagtca 2119981  T
Q  231 tctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctc 321  Q
    |||||| ||  |||||||||||| ||||| ||||||||||| ||||| |||||||||||| |||| |||||||||| | || |||||||||    
T  2119982 tctcggcttgtctggccacaataccatcaactatatgcaccccatctcggatgatcgtcagtgtgtcaggcatctccctggcatgctcctc 2120072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 322
Target Start/End: Complemental strand, 29902372 - 29902151
Alignment:
Q  102 cctaatcataatcaaccctgctgccagc-atgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||||| ||||||||||||||||  | ||| ||| ||||||||||| |||||| ||||  ||| ||||||| |||||||||||||  | | | ||| |    
T  29902372 cctaatcaaaatcaaccctgctgcctacgatgtctctgccccctacgctgcctggaaatccaatatgtaagggcagggcgaccagtagtgccaatccgaa 29902273  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    |||||||||| |  |||||||||||||||||||||    ||||| ||||||||| ||||||||| |||||||||||  |||||||||||| |||| |  |    
T  29902272 tcacctcctgaaatatctcctctttagtcatctcgccactcctgaccacaatattatcagctatctgcaccacatcccggatgatcgtcagtgtgtcgag 29902173  T
Q  301 catctctccggtatgctcctcc 322  Q
    ||||||||  | ||||||||||    
T  29902172 catctctctcgcatgctcctcc 29902151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 15738244 - 15738436
Alignment:
Q  130 atgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtc 229  Q
    ||||||| ||||||| ||  |||||||||||||||||||||||| ||||||||| |||| | | | ||| ||||||||||  ||| | ||||||||||||    
T  15738244 atgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctcctaaacagtatcctctttagtc 15738343  T
Q  230 atctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    |||| |    |||| | |||||||| ||||||||| |||||||||||    |||||||||| |||| |||||||||||| || ||||||||||    
T  15738344 atcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcaggcatctctctggcatgctcctcc 15738436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 694860 - 694944
Alignment:
Q  222 ctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctc 306  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||||||||||  |||||||||||| |||| ||||||||||    
T  694860 ctttagtcatctcggcttgcctagccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtgtgtcaggcatctc 694944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20725569 - 20725489
Alignment:
Q  156 caatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcgg 236  Q
    ||||||||||| |||||| |||||||||||||| | | | ||| |||| |||||| || | ||||||||||||||||||||    
T  20725569 caatctgatacataagggcagggcgaccagtactgccaatccggatcatctcctgcacgagctcctctttagtcatctcgg 20725489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 308
Target Start/End: Complemental strand, 21833605 - 21833398
Alignment:
Q  102 cctaatcataatcaaccctgctgccagc-atgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||| ||||||||| ||||||||  | ||||||| |||||||  |  ||||| ||||  |||| ||||||| ||||||||||||||   | | ||| |    
T  21833605 cctaatgataatcaactctgctgcctacgatgcctctgccccctgagatgcctgacaattcgatatgtaagggcagggcgaccagtactaccaatccgga 21833506  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||| |||||| |||| ||||||||||||||||||    | | ||||||||| || |||||| |  ||||| |||||   |||||| ||||||||| ||||    
T  21833505 tcatctcctgcacaagctcctctttagtcatctcttcctgcatggccacaacattatcagccacctgcacgacatccctgatgattgtcaatgtgtcagg 21833406  T
Q  301 catctctc 308  Q
     |||||||    
T  21833405 gatctctc 21833398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15738095 - 15738160
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaataccaaaatgtatggaatatgtcataat 66  Q
    ||||||||||||| ||||||  |||||||||||| |||||| |||||||| | || ||||||||||    
T  15738095 aaataatataaaaggtatgtacgaaaatgtcatagaaatactaaaatgtacgaaacatgtcataat 15738160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 26172783 - 26172699
Alignment:
Q  150 gcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctc 234  Q
    |||||||||||| ||||||||||| |||||||||||||| | | | ||| || | |||||| || | |||| |||||||||||||    
T  26172783 gcctggcaatctaatacgtaagggcagggcgaccagtactgccaatccggataatctcctgcaccagctccgctttagtcatctc 26172699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 26391596 - 26391544
Alignment:
Q  270 ccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    |||||||| |||||||||| | |||| |||||||||||| || ||||||||||    
T  26391596 ccacatctcggatgatcgttagtgtgtcaggcatctctctggcatgctcctcc 26391544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 102 - 322
Target Start/End: Original strand, 2966 - 3187
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  2966 cctaatcataatcaaccctgttgcctagcacgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggatatccgca 3065  T
Q  201 tcacctcctggacaatctcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcagg 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||| ||| | |||| |||     
T  3066 tcacctcctggacaatctcctctttagtcatctcggtttgcctggctacaatatcatcagctatatgcaccacatctcagatgaccgttagtgtgtcaga 3165  T
Q  301 catctctccggtatgctcctcc 322  Q
    |||||||| || ||||||||||    
T  3166 catctctctggcatgctcctcc 3187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2844 - 2917
Alignment:
Q  1 aaataatataaaatgtatgtcggaaaatgtcatacaaat----accaaaatgtatggaatatgtcataattata 70  Q
    ||||||||||||| |||||||| ||||||||||| ||||    |  |||||||| |||| ||||||||||||||    
T  2844 aaataatataaaaggtatgtcgaaaaatgtcatagaaataaaaaaaaaaatgtacggaacatgtcataattata 2917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 150 - 322
Target Start/End: Complemental strand, 45738 - 45566
Alignment:
Q  150 gcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcggttttcctggccac 249  Q
    ||||||||||| |||| ||||||| | |||||||||||  | | | ||  ||||||||||| ||||||||||||||||||||||||    ||||||||||    
T  45738 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 45639  T
Q  250 aatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgctcctcc 322  Q
    ||||||||||||||| ||||||| ||   |||||||||||| |||| ||| |||||||| || ||||||||||    
T  45638 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcagacatctctctggcatgctcctcc 45566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 5551 - 5433
Alignment:
Q  102 cctaatcataatcaaccctgctgcc-agcatgcctcggccccctacgccgcctggcaatctgatacgtaagggtagggcgaccagtaccggctacccgca 200  Q
    |||||| ||||||| |||||||||| | | |||||| ||||||| |||||||| ||||||| ||| ||||||| |||||||| |||||  |||| |||||    
T  5551 cctaataataatcagccctgctgcctaccttgcctctgccccctgcgccgcctagcaatctaataagtaagggcagggcgactagtactagctatccgca 5452  T
Q  201 tcacctcctggacaatctc 219  Q
    ||||||||||||| |||||    
T  5451 tcacctcctggacgatctc 5433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 29398 - 29318
Alignment:
Q  156 caatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggacaatctcctctttagtcatctcgg 236  Q
    ||||||||||| |||||| |||||||||||||| | | | ||| |||| |||||| || | ||||||||||||||||||||    
T  29398 caatctgatacataagggcagggcgaccagtactgccaatccggatcatctcctgcacgagctcctctttagtcatctcgg 29318  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 62861 - 62964
Alignment:
Q  218 tcctctttagtcatctcggttttcctggccacaatatcatcagctatatgcaccacatcttggatgatcgtcaatgtggcaggcatctctccggtatgct 317  Q
    |||||| ||||||||||||   || ||||||||  || || || ||| ||||| ||||| | |||||||||||||||| |||||||||||| || |||||    
T  62861 tcctctgtagtcatctcggcgctcatggccacatcattattagatatctgcacgacatccttgatgatcgtcaatgtgtcaggcatctctctggcatgct 62960  T
Q  318 cctc 321  Q
    ||||    
T  62961 cctc 62964  T

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