View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11682_high_1 (Length: 418)
Name: NF11682_high_1
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 14527518 - 14527130
Alignment:
| Q |
12 |
aagaacttaagtggggggaccatttcctatgaaacaaagcttttgtgactgacataagatacctgaatgggagacaagaccctaacattgttgaaatcaa |
111 |
Q |
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| T |
14527518 |
aagaacttaagtggggggaccatttcctatgaaacaaagcttttgtgactgacataagatacctgaatgggagacaagaccctaacattgttgaaatcaa |
14527419 |
T |
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| Q |
112 |
aataaaagagcaacataaatttagagcattggtgggctctgtgcgatcccattcaacaacaagttgcctgcattttcgttgacattatgtactttgtgtc |
211 |
Q |
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| T |
14527418 |
aataaaagagcaacataaatttagagcattggtgggctctttgcgatcccattcaacaacaagttgcctgcattttcgttgacattatgtactttgtgtc |
14527319 |
T |
|
| Q |
212 |
tctccaaattacataaaccacactatctttggggcaacatttgtttagagagacctaataaaacagaaggggacattgatagagtacatttttaataatg |
311 |
Q |
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| T |
14527318 |
tctccaaattacataaaccacactatctttggggcaacatttgtttagagagacctaacaaaacagaaggggacattgatagagtacatttttaataatg |
14527219 |
T |
|
| Q |
312 |
gggtcattcaatttaatattgcattgatttataagtttatgatttccatgttgacacgtagtaagttaccacacggccatcctctcacg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14527218 |
gggtcattcaatttaatattgcattgatttataagtttatgatttccatgttgacacgtagtaagttaccacacgaccatcctctcacg |
14527130 |
T |
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