View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11682_high_12 (Length: 354)
Name: NF11682_high_12
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 45177289 - 45177109
Alignment:
| Q |
1 |
ttcggtagcttcttcaacgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaa |
100 |
Q |
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| T |
45177289 |
ttcggtagcttcttcaacgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcatcatagcaagtgttattagcaattccaa |
45177190 |
T |
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| Q |
101 |
cctgctcaaattaaacaaaggattataatacgttaaagactatgtattgtgttacacatgacaaaataatgaactctcaac |
181 |
Q |
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| T |
45177189 |
cctgctcaaattaaacaaaggattataatacgttaaagactatgtattgtgttacacatgacaaaataatgaactctcaac |
45177109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 45175686 - 45175559
Alignment:
| Q |
181 |
ccttcgaagaaatgacaacaaccccctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagcc |
280 |
Q |
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| T |
45175686 |
ccttcgaataaatgacaacaaccccctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagcc |
45175587 |
T |
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| Q |
281 |
ttaagttgttcttcaattacaggatcaa |
308 |
Q |
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| T |
45175586 |
ttaagttgttcttcaattacaggatcaa |
45175559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 35816792 - 35816689
Alignment:
| Q |
5 |
gtagcttcttcaacgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaacctg |
104 |
Q |
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| T |
35816792 |
gtagcttattcaatgaatcccccgacaatcctctggatgctactaagctatgaacatcatgaatctcaccatagccagtgtaattagcaattccaacctg |
35816693 |
T |
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| Q |
105 |
ctca |
108 |
Q |
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|||| |
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| T |
35816692 |
ctca |
35816689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 45093572 - 45093735
Alignment:
| Q |
19 |
gaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaacctgctca-aattaaaca |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| | | ||||| |
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| T |
45093572 |
gaatcccatgacaatcctctggatgctactaagctatgaacatcatgaatcacatgatagccagtgtaattagcaattccaacctgctcatactaaaaca |
45093671 |
T |
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| Q |
118 |
aaggattataatacgttaaagactatgtattgtgttacacatgacaaaataatgaactctcaac |
181 |
Q |
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|| | | | ||||||||||| || || ||| || |||| ||||||||||||||||||| |||| |
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| T |
45093672 |
aatggtaacaatacgttaaaaacaatacattttgctacaaatgacaaaataatgaactcccaac |
45093735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 45102764 - 45102876
Alignment:
| Q |
3 |
cggtagcttcttcaacgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaacc |
102 |
Q |
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||||||||| ||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
45102764 |
cggtagcttattcaatgaatcccccgacaatcctgtggatgatactaagctatgaacatcatgaaactcatcatagccagtgttattagcaactccaacc |
45102863 |
T |
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| Q |
103 |
tgctcaaattaaa |
115 |
Q |
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|||||||| |||| |
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| T |
45102864 |
tgctcaaactaaa |
45102876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 45568241 - 45568412
Alignment:
| Q |
5 |
gtagcttcttcaacgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaacctg |
104 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
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| T |
45568241 |
gtagcttattcaatgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcattgtaaccagtgtaattagcaattcctacctg |
45568340 |
T |
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| Q |
105 |
ctca-aattaaacaaaggattataatacgttaaagactatgtattgtgttacacatgacaaaataatgaactc |
176 |
Q |
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|||| | | ||||||| ||| | |||| |||||| ||| | | ||||| |||| ||||||| ||||||||||| |
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| T |
45568341 |
ctcatactaaaacaaatgataacaatatgttaaaaactgtat-ttgtgctacaaatgacaacataatgaactc |
45568412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 44666546 - 44666689
Alignment:
| Q |
34 |
cctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaacctgctcaaa-ttaaacaaaggattataatacg |
132 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||| | |||| | ||| |||||||| |
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| T |
44666546 |
cctctagatgctactaagctatgaacatcaagaatctcatcatagcaggtgttattagcaattgcagcctgctcaaactaaaacggatgataataatacg |
44666645 |
T |
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| Q |
133 |
ttaaagactatgtattgtgttacacatgacaaaataatgaactc |
176 |
Q |
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||||| ||||| ||||||| ||||| ||||||| |||||||||| |
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| T |
44666646 |
ttaaaaactatatattgtgctacacttgacaaactaatgaactc |
44666689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 44685870 - 44686013
Alignment:
| Q |
34 |
cctctggatgctactaagctatgaacatcatgaatctcatcatagccagtgttattagcaattccaacctgctcaaa-ttaaacaaaggattataatacg |
132 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||| | |||| | ||| |||||||| |
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| T |
44685870 |
cctctagatgctactaagctatgaacatcaagaatctcatcatagcaggtgttattagcaattgcagcctgctcaaactaaaacggatgataataatacg |
44685969 |
T |
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| Q |
133 |
ttaaagactatgtattgtgttacacatgacaaaataatgaactc |
176 |
Q |
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||||| ||||| ||||||| ||||| ||||||| |||||||||| |
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| T |
44685970 |
ttaaaaactatatattgtgctacacttgacaaactaatgaactc |
44686013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 45094818 - 45094857
Alignment:
| Q |
282 |
taagttgttcttcaattacaggatcaaagcaaatctacta |
321 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||| |
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| T |
45094818 |
taagttgttcttcagttgcaggatcaaagcaaatctacta |
45094857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 45569688 - 45569755
Alignment:
| Q |
214 |
ccaaatttccaaacccaactacccgcaagtaatt-atgcagcgatctattacacaaaaagcagcagcc |
280 |
Q |
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||||||||||| | || |||||| |||||||||| ||||||||| |||||||| ||||||||| |||| |
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| T |
45569688 |
ccaaatttccacatcctactaccagcaagtaatttatgcagcgaactattacataaaaagcagaagcc |
45569755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 181 - 354
Target Start/End: Original strand, 9798117 - 9798290
Alignment:
| Q |
181 |
ccttcgaagaaatgacaacaaccccctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagcc |
280 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9798117 |
ccttcgaaaaaatgacaacaaccccctttagcaccaaatttccaaacccaactacccgcaagtaattatgcagcgatctattacacaaaaagcagcagcc |
9798216 |
T |
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| Q |
281 |
ttaagttgttcttcaattacaggatcaaagcaaatctactaacatatcattgttaacttagctatattcttgga |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9798217 |
ttaagttgttcttcaattacaggatcaaagcaaatctactaacatatcattgttaacttagctacattcttgga |
9798290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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