View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11682_high_13 (Length: 353)
Name: NF11682_high_13
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 21153156 - 21153254
Alignment:
| Q |
14 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
112 |
Q |
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| T |
21153156 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21153254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 21160291 - 21160389
Alignment:
| Q |
14 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
112 |
Q |
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| T |
21160291 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21160389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 21164097 - 21164195
Alignment:
| Q |
14 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
112 |
Q |
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| T |
21164097 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactatagacaggtacgttaagcacaaagtatgcgaagagtagataataaa |
21164195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 2717829 - 2717933
Alignment:
| Q |
30 |
acaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaaggataacaaaaagacga |
129 |
Q |
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| T |
2717829 |
acaaatactaacta-ttttttaatgcaaataatatcactgacaactatattaagcacaaagtgtgccaagagtagataaaaaaggataacaaagaggcga |
2717927 |
T |
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| Q |
130 |
tacaat |
135 |
Q |
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||||| |
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| T |
2717928 |
aacaat |
2717933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 2718025 - 2718070
Alignment:
| Q |
228 |
aaaagaactttacaatctacttctttggctactctacatgcatatc |
273 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2718025 |
aaaaaaactttacaatgtacttctttggctactctacatgcatatc |
2718070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 22343565 - 22343631
Alignment:
| Q |
127 |
cgatacaatgccaaaacgtcacaaaactacagccaccaaaagaacaaacacaacactaccaaaacct |
193 |
Q |
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| T |
22343565 |
cgatacaatgctaaaatggcacaaaacaccaaccaccaaaacaacaaacacaaaactaccaaaacct |
22343631 |
T |
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