View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11682_high_1_N (Length: 671)
Name: NF11682_high_1_N
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_1_N |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 7e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 422 - 644
Target Start/End: Original strand, 42025686 - 42025906
Alignment:
| Q |
422 |
catattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattccgagagtataatctacccacggagctac |
521 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | | | || | |||||| |
|
|
| T |
42025686 |
catattcaccctattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatacttttattctgagagtatagt-tccacatg-agctac |
42025783 |
T |
|
| Q |
522 |
caaataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgctaaccaaataagtgacat |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42025784 |
caaataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgctaaccaaacaagtgacat |
42025883 |
T |
|
| Q |
622 |
tcctaagaaacattcattgtttg |
644 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42025884 |
tcctaagaaacattcattgtttg |
42025906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 141 - 327
Target Start/End: Original strand, 42025044 - 42025245
Alignment:
| Q |
141 |
aaaggaccacttaatttagaatagaggaaatatagtaacacctaagattt-atttaatatggcttgctattatgagcgacaagggtactgaaacttttca |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42025044 |
aaaggaccacttaatttagaatagaggaaatatagtaacacctaagattttatttaatacggcttgctattatgagcgacaagggtactaaaacttttca |
42025143 |
T |
|
| Q |
240 |
attttattaatcttcatcaaccacttaa--------------tagaattgataaaatatagcattaaactgtaaaaatggcaactgcaaaagaataaaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42025144 |
attttattaatcttcatcaaccacttaatagaattgataaggtagaattgataaaatatagctttaaactgtaaaaatggcaactacaaaagaataaaaa |
42025243 |
T |
|
| Q |
326 |
ta |
327 |
Q |
| |
|
|| |
|
|
| T |
42025244 |
ta |
42025245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 42024921 - 42024985
Alignment:
| Q |
16 |
cacatcacgtatcacagaatgtcatcttcaaagagatcttctagtacagaaacaaaaaatccaag |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42024921 |
cacatcacgtatcacagaatgtcatcttcaaagagatcttctagcacagaaacaaaaaatccaag |
42024985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 42025591 - 42025633
Alignment:
| Q |
324 |
aatactagtatatatgcacacatacacttgcactatcaccaca |
366 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42025591 |
aatactagtatatatgcacacatatacttgcactatcaccaca |
42025633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 422 - 574
Target Start/End: Original strand, 1252895 - 1253045
Alignment:
| Q |
422 |
catattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattccgagagtataatctacccacggagctac |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | | | || ||||||| |
|
|
| T |
1252895 |
catattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctgagaatatagt-tccaca-tgagctac |
1252992 |
T |
|
| Q |
522 |
caaataaggtaactcaccttcatttctactactttgatattcacacaggcaat |
574 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1252993 |
caaataagggaactcaccttcatttctactactttgatattcacacaggcaat |
1253045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 1252797 - 1252839
Alignment:
| Q |
324 |
aatactagtatatatgcacacatacacttgcactatcaccaca |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1252797 |
aatactagtatatatgcacacatacacttgcactatcaccaca |
1252839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University