View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11682_high_5 (Length: 413)
Name: NF11682_high_5
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 241 - 383
Target Start/End: Complemental strand, 49018995 - 49018853
Alignment:
| Q |
241 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49018995 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttctga |
49018896 |
T |
|
| Q |
341 |
tcaccaacacaactcacaaacagttccaaaatcactcatgcat |
383 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49018895 |
tcaccaacacaacacacaaacagttccaaaatcactcatgcat |
49018853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 49019210 - 49019059
Alignment:
| Q |
23 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019210 |
catcatcaaattcaataaataattccaacccagatgtaaaac--aaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
49019113 |
T |
|
| Q |
123 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019112 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
49019059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 8345314 - 8345161
Alignment:
| Q |
23 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8345314 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
8345215 |
T |
|
| Q |
123 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
176 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8345214 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctgga |
8345161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 42824300 - 42824453
Alignment:
| Q |
23 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42824300 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
42824399 |
T |
|
| Q |
123 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
176 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
42824400 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctgga |
42824453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 241 - 374
Target Start/End: Complemental strand, 8345097 - 8344964
Alignment:
| Q |
241 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8345097 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
8344998 |
T |
|
| Q |
341 |
tcaccaacacaactcacaaacagttccaaaatca |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
8344997 |
tcaccaacacaacacacaaacagttccaaaatca |
8344964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 241 - 374
Target Start/End: Original strand, 42824544 - 42824677
Alignment:
| Q |
241 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42824544 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
42824643 |
T |
|
| Q |
341 |
tcaccaacacaactcacaaacagttccaaaatca |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
42824644 |
tcaccaacacaacacacaaacagttccaaaatca |
42824677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 50861337 - 50861266
Alignment:
| Q |
100 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttc |
171 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
50861337 |
acctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattttc |
50861266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 39073745 - 39073819
Alignment:
| Q |
100 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
174 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||| ||||| || |||||| ||||||||||||||| |
|
|
| T |
39073745 |
acctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattttcctg |
39073819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 36588096 - 36588170
Alignment:
| Q |
100 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
174 |
Q |
| |
|
|||||||| ||||||| | | | |||||||||||||||||| ||||| || |||||||| | ||||||||||||| |
|
|
| T |
36588096 |
acctgacaatctctatatccgccaatcaattcaccagaagtcgaatttgacgaaatcccaagatcaattttcctg |
36588170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 30331070 - 30331035
Alignment:
| Q |
23 |
catcatcaaattcaataaataattccaacccagata |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30331070 |
catcatcaaattcaataaataattccgacccagata |
30331035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University