View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11682_high_7 (Length: 405)

Name: NF11682_high_7
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11682_high_7
NF11682_high_7
[»] chr4 (1 HSPs)
chr4 (292-390)||(36085951-36086048)
[»] chr5 (1 HSPs)
chr5 (39-109)||(31184231-31184299)
[»] chr6 (3 HSPs)
chr6 (47-89)||(1759099-1759141)
chr6 (15-51)||(24414347-24414383)
chr6 (69-108)||(31038975-31039014)
[»] chr8 (1 HSPs)
chr8 (46-83)||(14983485-14983522)
[»] chr7 (1 HSPs)
chr7 (295-327)||(1335061-1335093)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 36085951 - 36086048
Alignment:
Q  292 cataagaatctaaaacctaaaactcataaattagaaaaaactca-caattaggatcatgaaactcacaaatcagaaattcatcaacaaattcagttgaat 390  Q
    |||||||||||||||||||||||||||||| ||||  |||||||  |||||||||| |||||||  ||||||||||| |||||| |||||||||||||||    
T  36085951 cataagaatctaaaacctaaaactcataaactagattaaactcataaattaggatcgtgaaact--caaatcagaaactcatcatcaaattcagttgaat 36086048  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
Q  39 tcttcactaacaaacacactaacatttcaattctaaaacctaacattacaagtattcaattaaaaattcag 109  Q
    |||||| ||||||||| || ||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  31184299 tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag 31184231  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
Q  47 aacaaacacactaacatttcaattctaaaacctaacattacaa 89  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  1759141 aacaaatacactaacatttcaatcctaaaacctaacattacaa 1759099  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 24414347 - 24414383
Alignment:
Q  15 agatggaaggaagaaatcttcaattcttcactaacaa 51  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24414347 agatggaaggaagaaatcttcaattctgcactaacaa 24414383  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
Q  69 ttctaaaacctaacattacaagtattcaattaaaaattca 108  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31039014 ttctaaaacctaacattacaagtattcaattttaaattca 31038975  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
Q  46 taacaaacacactaacatttcaattctaaaacctaaca 83  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14983485 taacaaacacactaacatttcaattttaaaacctaaca 14983522  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 1335061 - 1335093
Alignment:
Q  295 aagaatctaaaacctaaaactcataaattagaa 327  Q
    |||||||||||||||||||||||||||||||||    
T  1335061 aagaatctaaaacctaaaactcataaattagaa 1335093  T

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