View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11682_high_8 (Length: 393)
Name: NF11682_high_8
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 2 - 366
Target Start/End: Complemental strand, 23386169 - 23385802
Alignment:
| Q |
2 |
attgaggattgatcaacaagtctcacatgttcaatctttgatatgttatttgaaacataatactatcgaaacataatccagattaatgttatactatatt |
101 |
Q |
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| T |
23386169 |
attgaggattgatcaacaagtctcacatgttcaatctttgatatgttatttgaaacataatactatcgaaatataatccagattaatgttatactatatt |
23386070 |
T |
|
| Q |
102 |
tgcatttgaccgcaattttcttcaaattattttgtattgaccttgtatgaccttaccaaattttgcagttcaatagctataccatagttcaaactc---a |
198 |
Q |
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| T |
23386069 |
tgcatttgaccgcaattttcttcaaattattttgtattgaccttgtatgaccttaccaaattttgcagttcaatagctataccatagttcaaactcatta |
23385970 |
T |
|
| Q |
199 |
tatatatcatcttattacaagtattcaatatgtttatgtattaaaactatgattcgtcaaattgattagacattgataaaaacattttagaatttgagta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23385969 |
tatatatcatcttattacaagtattcaatatgtttatgtattaaaactatgattcgttaaattgattagacattgataaaaatattttagaatttgagta |
23385870 |
T |
|
| Q |
299 |
ggacttaacttaatatctttagaaaactggtttataaggctgagactatctccacttataagcaaatg |
366 |
Q |
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|||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
23385869 |
ggacttaactcaatatctttagaaaactggtttgtaaggttgagactctctccacttataagcaaatg |
23385802 |
T |
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