View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11682_high_9 (Length: 381)
Name: NF11682_high_9
Description: NF11682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11682_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 4761328 - 4761652
Alignment:
| Q |
29 |
tcatgactaagtggaaccagaaccatttttcttattatatcttaccatgcatagatttgttaacaatttttgttaatgtttgttacaatatgttaatctc |
128 |
Q |
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| T |
4761328 |
tcatgactaagtggaaccagaatcatttttcttattatatcttaccatgcatagatttgttaacaatttttgttaatgtttgttacaatatgttaatctc |
4761427 |
T |
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| Q |
129 |
accatttacgtaacagaaaatatcaataggcggggtttgttggtaaaccataataattaataattacattataattaaggttgcgtttatacccaattgt |
228 |
Q |
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| T |
4761428 |
accatttacgtaacagaaaatatcaataggcagggtttattggtaaaccataataattaataattacattataattaaggttgcgtttatacccaattgt |
4761527 |
T |
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| Q |
229 |
tctatgaaaaggacatattcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttcttttcagtcctattaaaat |
328 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761528 |
tcaatgaaaaggac--attcatacacgcaattgaaatcgttaccacaagacaagacaacatcattcataacacaatggttcttttcagtcctattaaaat |
4761625 |
T |
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| Q |
329 |
taaattgaggtacaagaaacatttgat |
355 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4761626 |
taaattgaggtacaagaaacatttgat |
4761652 |
T |
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