View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_high_11 (Length: 241)
Name: NF11683_high_11
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33277015 - 33276795
Alignment:
| Q |
1 |
ttcaatttctcagcaaactctttcgatttctcaatccctaaaagcttaggataagtaaccttatcagctaccaaatctttcccagcagttttccctaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33277015 |
ttcaatttctcagcaaactctttcgatttctcaatccctaaaagcttaggataagtaaccttatcagctaccaaatctttcccagcagttttccctaact |
33276916 |
T |
|
| Q |
101 |
cttgtgaagatttcgtcacatcaagaatatcatcaacaacctgaaacaataaaccaatataactcgcgaattttcgcagtttttcaacatcttcatcact |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33276915 |
cttgtgaagatttcgtcacatcaagaatatcatcaacaacctgaaacaataaaccaatatatgtcgcgaattttcgcagtttttcaacatcttcatcact |
33276816 |
T |
|
| Q |
201 |
tccaccacctaatattgcacc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
33276815 |
tccaccacctaatattgcacc |
33276795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 7340714 - 7340873
Alignment:
| Q |
2 |
tcaatttctcagcaaactctttcgatttct-caatccctaaaagcttaggataagtaaccttatcagctaccaaatctttcccagcagttttccctaact |
100 |
Q |
| |
|
||||||| ||||||||||| || ||||| | ||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| | |
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| T |
7340714 |
tcaatttgtcagcaaactccttagatttttccaatccc-aaaagcttaggataagtagctttatcagcagtcaaatctttcccagcagttttccctaatt |
7340812 |
T |
|
| Q |
101 |
cttgtgaagatttcgtcacatcaagaatatcatcaacaacctgaaacaataaaccaatata |
161 |
Q |
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| | || ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
7340813 |
cctcagatgatttagtaacatcaagaatgtcatcaacaacttgaaacaataatccaatata |
7340873 |
T |
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