View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_high_2 (Length: 433)
Name: NF11683_high_2
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 4922704 - 4922298
Alignment:
| Q |
13 |
cagatgcatcacccttattaccctcattccctattccattcatatcttcagctccatttccagcttcctcttgagattgaatttccgtcaattgcaacct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
4922704 |
cagatgcatcacccttattaccctcattccctattccattcatatcttcagctccatttccagcttcctcttgagattgaatttccgccgattgcaacct |
4922605 |
T |
|
| Q |
113 |
ccaatcaatttccttcatattgtcatctataaaggccgccaggtcattgagttcattcacattcacatcctcggtacgatattgtccagtactaaatatt |
212 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
4922604 |
ccaatcaatttccttcagattgtcatttataaaggccgccaggtcattaagttcattcacattcacatcctcgacacgatattgtctagtactaaatact |
4922505 |
T |
|
| Q |
213 |
ttagtaataaattgggcgaattcattcttcttgtttgcctccatttgtttcttcaacaacaattgagatttcgctatactttggtttaagtaagctgtca |
312 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || ||||||||||| ||||||||||||| |
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| T |
4922504 |
ttagtaataaatagggcgaattcattcttcttgtttgcctccatttgtttcctcaacagcaattgagattttgcaatactttggttcaagtaagctgtca |
4922405 |
T |
|
| Q |
313 |
aatccaccatatttttgcttcgttcgatttcaggcaagtgtaggaacttggataacacatcnnnnnnngcaagacctggtggccaaacctctggttgagc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
4922404 |
aatccaccatatttttgcttcgttcgatttcaggcaagtgtaggaacttggataacacatcttttgttgcaggacctggtggccaaacctctggttgagc |
4922305 |
T |
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| Q |
413 |
attgttt |
419 |
Q |
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| T |
4922304 |
attgttt |
4922298 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 21546325 - 21546403
Alignment:
| Q |
255 |
atttgtttcttcaacaacaattgagatttcgctatactttggtttaagtaagctgtcaaatccaccatatttttgcttc |
333 |
Q |
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||||||||| |||||||| |||| |||||| |||| |||||||||||||| | |||||||||| | |||||||||| |
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| T |
21546325 |
atttgtttcctcaacaactattgggatttcactatgctttggtttaagtagcccttcaaatccactaactttttgcttc |
21546403 |
T |
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