View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_high_3 (Length: 419)
Name: NF11683_high_3
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 31520240 - 31519846
Alignment:
| Q |
17 |
cacatcacatattttggtgcttctatctcacacatatatcactcatggcatatgttgattaccatgaaaattccattgctacccccacctctaccaatac |
116 |
Q |
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| T |
31520240 |
cacatcacatattttggtgcttctatctcacacatatatcactcatggcatatgttgattaccatgaaaattccattgctacccccacctctaccaatac |
31520141 |
T |
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| Q |
117 |
cctaaagctttttggcatcaacatccaagaagcttgtttgaaccaatctccaacacaatcagaatcatctgagcctttgaatgagagaaaattattcgag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
31520140 |
cctaaagctttttggcatcaacatccaagaagcttgtttgaaccaatctccaacacaatcagaatcatctgagcctttgaatgggagaaaattatacgag |
31520041 |
T |
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| Q |
217 |
tgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaagaaaggcaacttttgaaacgtgctcaaatgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31520040 |
tgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaagagaggcaacttttgaaacgtgctcaaatgc |
31519941 |
T |
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| Q |
317 |
aagcagctcgtgcctttgttccttcacatttccataacagattcatctcatcaccgcagtggctgccacaacaaaatcatttcctcgcctatgct |
411 |
Q |
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| T |
31519940 |
aagcagctcgtgcctttgttccttcacatttccataacagattcatctcatcaccgcagtggctgccacaacaaaatcatttcctcgccaatgct |
31519846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 15575116 - 15575040
Alignment:
| Q |
214 |
gagtgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaagaaag |
290 |
Q |
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| T |
15575116 |
gagtgtcaatattgtttcaaagaatttgcaaattcacaagcattaggaggccatcaaaatgcacacaagaaagaaag |
15575040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 22863319 - 22863245
Alignment:
| Q |
213 |
cgagtgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaaga |
287 |
Q |
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| T |
22863319 |
cgagtgtcaatattgttgtcgagaatttgcaaactcgcaagccctaggtggacaccaaaacgcacacaaaaaaga |
22863245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 49774318 - 49774393
Alignment:
| Q |
213 |
cgagtgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaagaa |
288 |
Q |
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| T |
49774318 |
cgagtgccaatattgttgcagagagtttgcaaattcacaagcccttggcggacaccaaaacgctcacaaaaaagaa |
49774393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 39663801 - 39663838
Alignment:
| Q |
244 |
aattcacaagccttaggaggacaccaaaatgcacacaa |
281 |
Q |
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| T |
39663801 |
aattcacaagccttagggggtcaccaaaatgcacacaa |
39663838 |
T |
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