View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_high_6 (Length: 265)
Name: NF11683_high_6
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 44450587 - 44450432
Alignment:
| Q |
94 |
gtcgtcagtcgaactttannnnnnnaatgaatcgtcacactgacagcatccaaaaattaaaataattgtttgttcactttcatttaaagagttgattttt |
193 |
Q |
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| T |
44450587 |
gtcgtcagtcgaactttatttttttaatgaatcgtcacactgacaacatccaaaaattaaaataattgtttgttcactttcatttaaagagttgattttt |
44450488 |
T |
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| Q |
194 |
agttccacctcacagcgtgtgatgtaataacaatgaataattaatctatttcatgc |
249 |
Q |
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| T |
44450487 |
agttccacctcacagcgtgtgatgtaataacaatgaataattaatctatttcatgc |
44450432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44450680 - 44450642
Alignment:
| Q |
1 |
caaaaagagagatataattatgtacaaataacgttgtcg |
39 |
Q |
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| T |
44450680 |
caaaaagagagatataattatgtacaaataacgttgtcg |
44450642 |
T |
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