View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11683_high_8 (Length: 250)
Name: NF11683_high_8
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_high_8 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 38189008 - 38189145
Alignment:
| Q |
11 |
cacagatgcattttgtaacagtgaaagagataacttacttctcacatgcacctttcctatacttgctggcctgaaaagttttagtaactctagagctcct |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189008 |
cacacatgcattttgtaacagtgaaagagataacttacttctcacatgcacctttcctatacttgctggcctgaaaagttttagtaactctagagctcct |
38189107 |
T |
|
| Q |
111 |
tgatgaggtactattgggatgagatatccgtctccttt |
148 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38189108 |
tgatgaggtattattgggatgagatatccgtttccttt |
38189145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 38189302 - 38189409
Alignment:
| Q |
143 |
tcctttccatcttcatcaaactcagcaggggcaagcccggatttacaggcttcctcaagctgaatctgtttttgatgatcctccctggacttgaatgtcg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38189302 |
tcctttccatcttcatcaaactcagcaggggcaagcccggatttacaggcttcctcaagctgaatctgtttttgatgatcctccctggacctgaatgtcg |
38189401 |
T |
|
| Q |
243 |
ctgcaatc |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
38189402 |
ctgcaatc |
38189409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 38920669 - 38920562
Alignment:
| Q |
143 |
tcctttccatcttcatcaaactcagcaggggcaagcccggatttacaggcttcctcaagctgaatctgtttttgatgatcctccctggacttgaatgtcg |
242 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||| ||| |||||| |||||||||| ||||| ||||||| | |
|
|
| T |
38920669 |
tccttgccatcttcatcaacctcagcaggtgcaagtccggctttacgagcttcctcaagctcaatttgttttcgatgatcctctctggatttgaatgcca |
38920570 |
T |
|
| Q |
243 |
ctgcaatc |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
38920569 |
ctgcaatc |
38920562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 38921637 - 38921573
Alignment:
| Q |
30 |
agtgaaagagataacttacttctcacatgcacctttcctatacttgctggcctgaaaagttttag |
94 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38921637 |
agtgaaagagatcacttacttctcacatgcacctttcctatacttctgggcctgaaaagttttag |
38921573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University