View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_low_2 (Length: 500)
Name: NF11683_low_2
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_low_2 |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 1845 - 2251
Alignment:
| Q |
17 |
atgacatatgtggcattcttcattctaagttcttctcttcttctactttagtaattaattacctacttcattgctgatactttttgttactctaattctt |
116 |
Q |
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| T |
1845 |
atgacatatgtggcattcatctttctaagttcttctcttcttctactttagtaattaattacctacttcattgctgatactttttgttactctaattctt |
1944 |
T |
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| Q |
117 |
catatttaaattggaatgaaatttgaggattggtaatattgatatgcacatcaactgcttccaatttctctctaaaccttggcagcaacataagaaaaaa |
216 |
Q |
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| T |
1945 |
catatttaaattggaatgaaatttgaggattggtaatattgatatgcacatcaactgcttccaatttctctctaaaccttggcagcaacataagaaaaaa |
2044 |
T |
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| Q |
217 |
tgaattatgctgtatatactcaagaaaaacttacagactagttgataaccatgttgtatatactcatcacaaccctctagtttctctgtaacttaatggc |
316 |
Q |
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| T |
2045 |
tgaattatgctgtatatactcaagaaaaacttacagactagttgataaccaagttgtatatactcatcacaaccctctagtttctctgtaacttaatggc |
2144 |
T |
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| Q |
317 |
cgcaag-nnnnnnnntggagagtttttattgtctgtgaggttcactttcattgctggggtagcaattatgctgcagaagctacagttattagcccctaaa |
415 |
Q |
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| T |
2145 |
cgcaagaaaaaaaaatggacagtttttattgtctgtgaggttcactttcattgttggggtagcaattatgctgcagaaggtacagttattagcccctaaa |
2244 |
T |
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| Q |
416 |
ccaaatt |
422 |
Q |
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| T |
2245 |
ccaaatt |
2251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 2297 - 2355
Alignment:
| Q |
432 |
gttatttaggtaggggagggtccaggtgagaggcaataaaacagtggttagtctctctg |
490 |
Q |
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| T |
2297 |
gttatttaggtaggggagggtctaggtgagagccattaaaaaagtggttagtctctctg |
2355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 15719345 - 15719278
Alignment:
| Q |
90 |
ctgatactttttgttactctaattcttcatatttaaattggaatgaaatttgaggattggtaatattg |
157 |
Q |
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| T |
15719345 |
ctgatactttttgtttctctaaatcttcatatttaaattcgaatgcaatttgaggattggtaaaattg |
15719278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 16701204 - 16701105
Alignment:
| Q |
23 |
tatgtggcattcttcattctaagttcttctcttcttctactttagtaattaattacctacttcattgctgatactttttgttactctaattcttcatatt |
122 |
Q |
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| T |
16701204 |
tatgtgccattctgccatctaagttcttctctcttgctactttagtaattaattacctttttcaatgctgatactttttgttgttttaattcttcatatt |
16701105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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