View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_low_5 (Length: 395)
Name: NF11683_low_5
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 42955241 - 42955607
Alignment:
| Q |
1 |
tatactgaattattctggggggcgatttacaagattattagttgatttatttgttggcaatgtttcaaaatgcagttctttatgtttggtgtaatatact |
100 |
Q |
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| T |
42955241 |
tatactgaattattctggggggcgatttacaagattattagttgatttatttgttggcaatgtttcaaaatgcagttctttatgtttggtgtaatatact |
42955340 |
T |
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| Q |
101 |
ctcttgcagtccgtatgcagtcaaataaataaactatttacaattatctatgtgattctctcattt---------gtactttattactgtagtgatcgat |
191 |
Q |
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| T |
42955341 |
ctcttgcagtccgtatgcagtcaaataaataaactatttacaattatctatatgattctctcatttgtacttgtagtactttattactgtagtgatcgat |
42955440 |
T |
|
| Q |
192 |
aataatttatggagttctttcaaaaacgacaagaatctgatgcctgtgcttaaattattatagcactatcaggaaaactacaccattaaattaaattaca |
291 |
Q |
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| T |
42955441 |
aataatttatggagttcttacaaaaacgacaagaatctgatgcctgtgcttaaattattatag--------------------cattaaattaaattaca |
42955520 |
T |
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| Q |
292 |
tcaaaagttgtaatttcaaattccaagttcaattcttgttcagattttatcatcctctgtcgaattttgaattactagcgactattt |
378 |
Q |
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| T |
42955521 |
tcaaaagttgtaatttcaaattccgagttcaattcttgttcagattttatcatcctctgtcgaattttgaattactagcgactattt |
42955607 |
T |
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