View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11683_low_6 (Length: 267)
Name: NF11683_low_6
Description: NF11683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11683_low_6 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 12571643 - 12571884
Alignment:
| Q |
10 |
cacagactctagcagtcaacttgcctcagaccaaatcgggcgtcgaaattcccttctttgacaccagaaaaatgtcagttgaattgggaatagaaccaca |
109 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12571643 |
cacaaactctagcagtctacttgcctcagaccaaaccgggcgtcgaaattgtcttctctgacaccagaaaaatgtgagttgaattgggaatagaaccaca |
12571742 |
T |
|
| Q |
110 |
acaaaagcagaaaaaatggtctaaaccatctgcatcagcaagtcagcaaaataggatatagcagcagacctctgaaatgaaaaaagtgccgatgtaatgt |
209 |
Q |
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|||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12571743 |
caaaaaacagaaaaaatggtccaaacaatctgcatcagcaagtcagcaaaataggatatagcagcagacctctgaaatgaataaagtgccgatgtaatgt |
12571842 |
T |
|
| Q |
210 |
accaccaagaaaattctctaattcctaaataagtgtaggact |
251 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
12571843 |
accaccaagaaaattctctaattcctaaacaagagtaggact |
12571884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 13548107 - 13548348
Alignment:
| Q |
10 |
cacagactctagcagtcaacttgcctcagaccaaatcgggcgtcgaaattcccttctttgacaccagaaaaatgtcagttgaattgggaatagaaccaca |
109 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13548107 |
cacaaactctagcagtctacttgcctcagaccaaaccgggcgtcgaaattgtcttctctgacaccagaaaaatgtgagttgaattgggaatagaaccaca |
13548206 |
T |
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| Q |
110 |
acaaaagcagaaaaaatggtctaaaccatctgcatcagcaagtcagcaaaataggatatagcagcagacctctgaaatgaaaaaagtgccgatgtaatgt |
209 |
Q |
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|||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13548207 |
caaaaaacagaaaaaatggtccaaacaatctgcatcagcaagtcagcaaaataggatatagcagcagacctctgaaatgaataaagtgccgatgtaatgt |
13548306 |
T |
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| Q |
210 |
accaccaagaaaattctctaattcctaaataagtgtaggact |
251 |
Q |
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| T |
13548307 |
accaccaagaaaattctctaattcctaaacaagagtaggact |
13548348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 4293854 - 4293610
Alignment:
| Q |
10 |
cacagactctagcagtcaacttgcctcagaccaaatcgggcgtcgaaattcccttctttgacaccagaaaaatgtcagttgaattgggaatagaaccaca |
109 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
4293854 |
cacaaactctagcagtctacttgcctcagaccaaaccgggcgtcgaaattatcttctctgacaccagaaaaatctcagtagagttgggaatagaaccaca |
4293755 |
T |
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| Q |
110 |
acaaaagcagaaaaaatggtctaaaccatctgcatcagcaagtcagcaaaataggatatagca---gcagacctctgaaatgaaaaaagtgccgatgtaa |
206 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
4293754 |
ccaaaagcagaaaaaatggtccaaacaatctgcatcagcaagtcagcaaaataagatatagcagcagcagacctctgaaatgaaaaaagtaccgatgtaa |
4293655 |
T |
|
| Q |
207 |
tgtaccaccaagaaaattctctaattcctaaataagtgtaggact |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4293654 |
tgtaccaccaagaaaattctctaattcctaaataagagtaggact |
4293610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 33299 - 33216
Alignment:
| Q |
10 |
cacagactctagcagtcaacttgcctcagaccaaatcgggcgtcgaaattcccttctttgacaccagaaaaatgtcagttgaat |
93 |
Q |
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| T |
33299 |
cacaaactctagcagtctacttgcctcagaccaaaccgggcgtcgaaattctcttctctgacatcagaaaaatgtgagttgaat |
33216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 4352027 - 4351977
Alignment:
| Q |
10 |
cacagactctagcagtcaacttgcctcagaccaaatcgggcgtcgaaattc |
60 |
Q |
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| T |
4352027 |
cacaaactctagcagtctacttgccttagaccaaaccgggcgtcgaaattc |
4351977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 6957786 - 6957659
Alignment:
| Q |
46 |
cgggcgtcgaaattcccttctttgacaccagaaaaatgtcagttgaattgggaatagaaccacaacaaaagcagaaaaaatggtctaa-accatctgcat |
144 |
Q |
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| T |
6957786 |
cgggcgtcaaaattcacttctgtaacaccattaaaatgtaagttgaattggcaacagaatcacaccagaagc-ggaaaaatggcctaacaaaatctgcag |
6957688 |
T |
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| Q |
145 |
cagcaagtcagcaaaataggatatagcag |
173 |
Q |
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| T |
6957687 |
cagcaagtcaacaaaacagggcatagcag |
6957659 |
T |
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