View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11684_high_4 (Length: 260)

Name: NF11684_high_4

Description: NF11684

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11684_high_4

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 183; E-Value: 4e-99

Query Start/End: Original strand, 1 - 183

Target Start/End: Original strand, 41706258 - 41706440

Alignment:

Q	1	tacgaacgtaatcgtgatcttcaaattcgagtaaacaaacggcacagtcacggcgagattcttgttcgtatttagttgtgtagataaagaatgggattgt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41706258	tacgaacgtaatcgtgatcttcaaattcgagtaaacaaacggcacagtcacggcgagattcttgttcgtatttagttgtgtagataaagaatgggattgt	41706357	T

Q	101	tttgatgatagattcgtctaaaccgtaggtgagtggtgtttcgaaagatgttgagtcgtattgaagggattcaatatcgccta	183	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41706358	tttgatgatagattcgtctaaaccgtaggtgagtggtgtttcgaaagatgttgagtcgtattgaagggattcaatatcgccta	41706440	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 207 - 237

Target Start/End: Original strand, 41706464 - 41706494

Alignment:

Q	207	cggtggaagcgttgaatgagacggtggatgg	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41706464	cggtggaagcgttgaatgagacggtggatgg	41706494	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]