View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11684_low_2 (Length: 472)
Name: NF11684_low_2
Description: NF11684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11684_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 36104243 - 36103805
Alignment:
| Q |
21 |
acagcaaagtgcagataatagtgtcgaaggaaccaaagttagctcaaattcaatttgttcccgctccgaatgtctggtccttgatgtgaggaggtgtata |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36104243 |
acagcaaagtgcagataatagtgtcgaaggaaccaaagttagctcaaattcaatctgttcccgcttcgaatgtctggtccttgatgtgaggaggtgtata |
36104144 |
T |
|
| Q |
121 |
aagatccaacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104143 |
aagatccaacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatc |
36104044 |
T |
|
| Q |
221 |
tgggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36104043 |
tgggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggc |
36103944 |
T |
|
| Q |
321 |
tcgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttaccatgtctccaaatgtatgctgatcaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36103943 |
tcgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttacaatgtctccaaatgtatgctgatcaa |
36103844 |
T |
|
| Q |
421 |
ataaaactccctctcctttcaaatcatcccacaccctct |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
36103843 |
ataaaactccctctcctttcaaatcatcccacaccctct |
36103805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 459
Target Start/End: Complemental strand, 36142163 - 36142134
Alignment:
| Q |
430 |
cctctcctttcaaatcatcccacaccctct |
459 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
36142163 |
cctctcctttcaaatcatcccacaccctct |
36142134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 10857460 - 10857022
Alignment:
| Q |
21 |
acagcaaagtgcagataatagtgtcgaaggaaccaaagttagctcaaattcaatttgttcccgctccgaatgtctggtccttgatgtgaggaggtgtata |
120 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10857460 |
acagctaagtgcagataatagtgtcgaaggaaccaaagttagctcaaattcaatttgttcccgctccgaatgtctggtccttgatgtgaggaagtgtata |
10857361 |
T |
|
| Q |
121 |
aagatccaacactgactcaataaatgtcactattagatacatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatc |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857360 |
aagatccaacactgactcaataaatgtcacaattagattcatcatcatgcttctcatgatcgtcgaacaaatcctcaggagggtcgtagatgatcatatc |
10857261 |
T |
|
| Q |
221 |
tgggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggc |
320 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857260 |
tgggaaaacctccaaaaagtcatcttttattttctctcttaattcgggatatggaattagtccttttaatattacacggaaaggtaatgacagaggaggc |
10857161 |
T |
|
| Q |
321 |
tcgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttaccatgtctccaaatgtatgctgatcaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10857160 |
tcgggagattgtctcatttcttcatatatgtccatggcctctgagggcataccactatcaagataggctcttacaatgtctccaaatgtatgctgatcaa |
10857061 |
T |
|
| Q |
421 |
ataaaactccctctcctttcaaatcatcccacaccctct |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10857060 |
ataaaactccctctcctttcaaatcatcccacaccctct |
10857022 |
T |
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