View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11684_low_3 (Length: 265)

Name: NF11684_low_3
Description: NF11684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11684_low_3
NF11684_low_3
[»] chr6 (7 HSPs)
chr6 (149-256)||(1898043-1898150)
chr6 (21-119)||(1897918-1898013)
chr6 (175-256)||(1903369-1903450)
chr6 (175-256)||(1907602-1907683)
chr6 (150-201)||(1880601-1880652)
chr6 (64-112)||(1903296-1903344)
chr6 (64-112)||(1907529-1907577)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 1898043 - 1898150
Alignment:
Q  149 ccatagaatccaaatcctttacaagtaaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttatt 248  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898043 ccatagaatccaaatcctttacaagtaaatatttcttcatttcttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttatt 1898142  T
Q  249 catctcac 256  Q
    ||| ||||    
T  1898143 catttcac 1898150  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 1897918 - 1898013
Alignment:
Q  21 accaacacgtgccagacatcgatacatgttggacactgaacaccacgtcttcaatatgaagtatcagtgctacatagtatttactagaatgtataattc 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1897918 accagcacgtgccagacatcgatacatgttggacactgaacac---gttttcaatatgaagtatcagtgctacatagtatttactagaatgtataattc 1898013  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 1903369 - 1903450
Alignment:
Q  175 aaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatctcac 256  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1903369 aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac 1903450  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 1907602 - 1907683
Alignment:
Q  175 aaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatctcac 256  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1907602 aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac 1907683  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 1880601 - 1880652
Alignment:
Q  150 catagaatccaaatcctttacaagtaaatatttcttcattacttgttattta 201  Q
    ||||||||| | |||||||||||||||||||||||||||| ||| |||||||    
T  1880601 catagaatcaatatcctttacaagtaaatatttcttcatttctttttattta 1880652  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 1903296 - 1903344
Alignment:
Q  64 cacgtcttcaatatgaagtatcagtgctacatagtatttactagaatgt 112  Q
    |||| ||||||| ||||||||| ||||| ||||||||||||||||||||    
T  1903296 cacgccttcaatgtgaagtatcggtgctgcatagtatttactagaatgt 1903344  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 1907529 - 1907577
Alignment:
Q  64 cacgtcttcaatatgaagtatcagtgctacatagtatttactagaatgt 112  Q
    |||| ||||||| ||||||||| ||||| ||||||||||||||||||||    
T  1907529 cacgccttcaatgtgaagtatcggtgctgcatagtatttactagaatgt 1907577  T

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