View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11684_low_5 (Length: 253)

Name: NF11684_low_5
Description: NF11684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11684_low_5
NF11684_low_5
[»] chr6 (10 HSPs)
chr6 (20-253)||(30517220-30517453)
chr6 (20-136)||(14741624-14741741)
chr6 (136-253)||(14741478-14741596)
chr6 (136-253)||(33334983-33335101)
chr6 (39-136)||(13882827-13882924)
chr6 (39-136)||(22344996-22345093)
chr6 (39-136)||(31249447-31249544)
chr6 (39-136)||(35202059-35202156)
chr6 (20-136)||(24435126-24435242)
chr6 (20-136)||(33335129-33335245)
[»] chr2 (11 HSPs)
chr2 (20-136)||(39483684-39483800)
chr2 (20-136)||(19345195-19345311)
chr2 (136-253)||(19345339-19345457)
chr2 (39-136)||(2740293-2740390)
chr2 (39-136)||(17942909-17943006)
chr2 (39-136)||(30478365-30478462)
chr2 (39-136)||(39686335-39686432)
chr2 (20-136)||(31056876-31056992)
chr2 (39-136)||(20050758-20050855)
chr2 (136-246)||(39483828-39483939)
chr2 (39-136)||(22713230-22713327)
[»] chr1 (9 HSPs)
chr1 (20-136)||(47703089-47703205)
chr1 (20-136)||(47102033-47102149)
chr1 (20-136)||(19360611-19360727)
chr1 (20-136)||(41391370-41391486)
chr1 (136-253)||(13599305-13599423)
chr1 (39-136)||(2394015-2394112)
chr1 (39-136)||(9525816-9525913)
chr1 (136-253)||(41391514-41391632)
chr1 (136-253)||(19360465-19360583)
[»] chr3 (18 HSPs)
chr3 (20-136)||(6793919-6794035)
chr3 (20-136)||(1306789-1306905)
chr3 (20-136)||(8513012-8513128)
chr3 (20-136)||(22172361-22172477)
chr3 (20-136)||(32476258-32476374)
chr3 (20-136)||(2676273-2676389)
chr3 (20-136)||(3327541-3327657)
chr3 (136-253)||(2676127-2676245)
chr3 (136-253)||(22172215-22172333)
chr3 (136-253)||(32476402-32476520)
chr3 (20-114)||(4386223-4386317)
chr3 (136-253)||(6793773-6793891)
chr3 (136-253)||(8513156-8513274)
chr3 (39-137)||(10595744-10595842)
chr3 (39-136)||(10094802-10094899)
chr3 (39-136)||(10201688-10201785)
chr3 (39-136)||(47878885-47878982)
chr3 (39-136)||(54192596-54192693)
[»] chr8 (25 HSPs)
chr8 (20-136)||(26297301-26297417)
chr8 (20-136)||(26310558-26310674)
chr8 (20-136)||(33036986-33037102)
chr8 (20-136)||(18869723-18869839)
chr8 (20-136)||(26402378-26402494)
chr8 (20-136)||(34586893-34587009)
chr8 (136-245)||(14602503-14602613)
chr8 (20-119)||(19751605-19751704)
chr8 (136-253)||(33036840-33036958)
chr8 (39-136)||(28331983-28332080)
chr8 (20-108)||(10688345-10688433)
chr8 (20-136)||(35741307-35741423)
chr8 (21-108)||(33494365-33494452)
chr8 (136-253)||(10688171-10688289)
chr8 (136-253)||(19751443-19751561)
chr8 (136-253)||(35741451-35741569)
chr8 (39-136)||(4813222-4813319)
chr8 (39-136)||(16753256-16753353)
chr8 (39-136)||(25683995-25684092)
chr8 (39-135)||(26268987-26269083)
chr8 (136-253)||(18869577-18869695)
chr8 (136-249)||(26297445-26297559)
chr8 (136-249)||(26310702-26310816)
chr8 (39-136)||(590165-590262)
chr8 (39-136)||(28894852-28894949)
[»] chr5 (18 HSPs)
chr5 (20-136)||(28832977-28833093)
chr5 (20-114)||(19589215-19589309)
chr5 (20-136)||(43593039-43593155)
chr5 (20-136)||(43625833-43625949)
chr5 (136-253)||(31400899-31401017)
chr5 (136-253)||(33769101-33769219)
chr5 (136-253)||(37560500-37560618)
chr5 (20-108)||(31401073-31401161)
chr5 (20-136)||(33768957-33769073)
chr5 (20-119)||(27445751-27445850)
chr5 (136-253)||(27445885-27446003)
chr5 (136-253)||(43593183-43593301)
chr5 (136-253)||(43625977-43626095)
chr5 (136-253)||(28806629-28806747)
chr5 (136-253)||(28833121-28833239)
chr5 (20-117)||(22828500-22828597)
chr5 (20-108)||(37560674-37560762)
chr5 (39-136)||(25451845-25451942)
[»] chr4 (11 HSPs)
chr4 (20-136)||(3778356-3778472)
chr4 (20-136)||(6742589-6742705)
chr4 (20-136)||(16628045-16628161)
chr4 (20-136)||(18856494-18856610)
chr4 (23-136)||(3792186-3792299)
chr4 (23-136)||(9228385-9228498)
chr4 (136-253)||(9228239-9228357)
chr4 (136-253)||(18856638-18856756)
chr4 (39-136)||(4569431-4569528)
chr4 (39-136)||(15316329-15316426)
chr4 (41-117)||(16638268-16638344)
[»] chr7 (18 HSPs)
chr7 (20-136)||(18409584-18409700)
chr7 (20-136)||(20000519-20000635)
chr7 (20-136)||(21984051-21984167)
chr7 (39-136)||(9189199-9189296)
chr7 (20-136)||(12397677-12397793)
chr7 (20-136)||(16880845-16880961)
chr7 (20-136)||(21640608-21640724)
chr7 (20-136)||(24265376-24265492)
chr7 (20-136)||(24275931-24276047)
chr7 (136-253)||(21984195-21984313)
chr7 (136-253)||(16880989-16881107)
chr7 (136-253)||(21640752-21640870)
chr7 (136-253)||(24265230-24265348)
chr7 (39-136)||(3320784-3320881)
chr7 (39-136)||(25404745-25404842)
chr7 (150-253)||(3320924-3321027)
chr7 (136-253)||(18409728-18409846)
chr7 (39-136)||(7074139-7074236)
[»] scaffold0197 (4 HSPs)
scaffold0197 (20-136)||(13483-13599)
scaffold0197 (20-136)||(18362-18478)
scaffold0197 (136-253)||(13337-13455)
scaffold0197 (136-253)||(18216-18334)
[»] scaffold1764 (1 HSPs)
scaffold1764 (39-136)||(807-904)
[»] scaffold0259 (2 HSPs)
scaffold0259 (20-136)||(1438-1554)
scaffold0259 (136-253)||(1292-1410)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 30517453 - 30517220
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  30517453 accacaatctctttttatacaatcatgtctctaacaaaatacaaacgaatgtcaacgtgctttgttctcttatgatacacttgatgattcaccaaatgaa 30517354  T
Q  120 cgacattttggctatcattcctaactcaccatcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtag 219  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  30517353 tgacactttggctatcattcctaactcaccatcatacctttcaacaacatggcttcctttaccccttcaacaagtgtaatgcactccacttaagttgtag 30517254  T
Q  220 atagaaccaccacagattgttgatttgctttcca 253  Q
    ||||| |||||||| |||||||||||||||||||    
T  30517253 atagagccaccacaaattgttgatttgctttcca 30517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 14741741 - 14741624
Alignment:
Q  20 accacaatctctttt-tatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatga 118  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| |||    
T  14741741 accacaatctcttttgtattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtga 14741642  T
Q  119 acgacattttggctatca 136  Q
    | | || |||| ||||||    
T  14741641 atggcactttgactatca 14741624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 14741596 - 14741478
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  14741596 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 14741497  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  14741496 attgttgatttgccttcca 14741478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 33335101 - 33334983
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  33335101 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 33335002  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  33335001 attgttgatttgccttcca 33334983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 13882924 - 13882827
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  13882924 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 13882827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 22344996 - 22345093
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||||||||| | | ||| |||||||| | |||||| || |||||||| | |||||||| |||| |||||||||||    
T  22344996 caatcatgtctctgacgaagtgcaaatgaatgtcaatgtgttttgttctttcatgatatacctgatgatttgacaaatgaatgacactttggctatca 22345093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 31249447 - 31249544
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  31249447 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 31249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 35202059 - 35202156
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  35202059 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 35202156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 24435242 - 24435126
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||| |||| ||||||  ||  ||||| | | |||||| || |||| ||||| ||||||||||||| |||| ||||    
T  24435242 accacaatctcttttgattcaatcatgtttctatcaaagttaaagcgaatgtcaatgtgcttagtcctctcatgatgcacttgatgattctccaagtgaa 24435143  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  24435142 tgacactttgactatca 24435126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 33335245 - 33335129
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||||||||||  | ||||||||||||| ||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  33335245 accacaatctcttttgcttcaatcatgtctctgacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 33335146  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  33335145 tggcactttgactatca 33335129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 39483684 - 39483800
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | |||||| ||||||| |||||||||||||||||||||||| ||||    
T  39483684 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgcttagttctctcatgatacacttgatgattcgccaagtgaa 39483783  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  39483784 tgacactttgactatca 39483800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 19345195 - 19345311
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||||||||||  | ||||||||||||| ||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  19345195 accacaatctcttttgtttcaatcatgtctctgacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 19345294  T
Q  120 cgacattttggctatca 136  Q
     | || |||||||||||    
T  19345295 tggcactttggctatca 19345311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 19345339 - 19345457
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  19345339 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 19345438  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  19345439 attgttgatttgccttcca 19345457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 2740390 - 2740293
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||||||||| || |||||||||| | || |||||||||||    
T  2740390 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacttgatggtttgccaaatgaatggcactttggctatca 2740293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 17943006 - 17942909
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | |||||| || |||||||| |||||||||| |||| |||||||||||    
T  17943006 caatcatgtctcttacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatatacctgatgatttgccaaatgaatgacactttggctatca 17942909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 30478462 - 30478365
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  30478462 caatcatgtctcttacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 30478365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 39686432 - 39686335
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  39686432 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 39686335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 31056876 - 31056992
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || |||||||||||||||||||||  ||  ||||| | | ||||||  | || | ||||||||||||||| |||||||| ||||    
T  31056876 accacaatctcttttgattcaatcatgtctctaacaaagtggaagcgaatgtcaatgtgcttaatcctttcatgatacacttgatggttcgccaagtgaa 31056975  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  31056976 tggcactttgactatca 31056992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 20050758 - 20050855
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||| |||||||| | |||||| || |||||||| |||||||||| | || |||||||||||    
T  20050758 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgttttgttctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 20050855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 39483828 - 39483939
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||||||||||||| | ||||  |  || ||||||||| |||| | |||| ||||| ||| |||||| ||||   | |||||||    
T  39483828 attcctaactcaccaatcatacctttcaaccatatggtctctttcaccccttcaacaagggcaatgtactccgcttgagttgttgataatgctaccacag 39483927  T
Q  235 attgttgatttg 246  Q
    ||||||||||||    
T  39483928 attgttgatttg 39483939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 22713230 - 22713327
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||| ||||| || | |||||| || |||||||| |||||||||| | || |||||||||||    
T  22713230 caatcatgtctcttacgaagtgcaaacgaatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 22713327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 47703205 - 47703089
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | |||||| || |||| |||||||||||||||||||||||| ||||    
T  47703205 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgcttagtcctctcatgatacacttgatgattcgccaagtgaa 47703106  T
Q  120 cgacattttggctatca 136  Q
     |||| |||||||||||    
T  47703105 tgacactttggctatca 47703089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 47102149 - 47102033
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || |||||||||||||||||||||  ||  ||||| | | ||||||||| |||| ||||||||||||||||||| |||| ||||    
T  47102149 accacaatctcttttgattcaatcatgtctctaacaaagtgtaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgattcaccaagtgaa 47102050  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  47102049 tgacactttgactatca 47102033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 19360727 - 19360611
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| ||||||||| ||||||||  |||| ||||    
T  19360727 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagggaatgtcaatgtgctttgtcctctcatgatacacgtgatgattttccaagtgaa 19360628  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  19360627 tgacactttgactatca 19360611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 41391370 - 41391486
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  41391370 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 41391469  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  41391470 tggcactttgactatca 41391486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 13599305 - 13599423
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||||||||||||| | ||||| || || ||||||||| |||| | |||| ||||| ||| |||||| ||||   ||||||| |    
T  13599305 attcctaactcaccaatcatacctttcaaccatatggcctatttcaccccttcaacaagggcaatggactccgcttgagttgttgataatgccaccacgg 13599404  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  13599405 attgttgatttgccttcca 13599423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 2394015 - 2394112
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    |||||||||||||||| |||| |||| ||||| | | |||||||||||| | |||||| || |||||||| |||||||||| | || |||||||||||    
T  2394015 caatcatgtctctaacgaagtgcaaacgaatgtcaatgtgctttgttctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 2394112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 9525913 - 9525816
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | |||||||||||||||||| |||||||||| | || |||||||||||    
T  9525913 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaaatgaatggcactttggctatca 9525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 41391514 - 41391632
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| ||| |||||||   ||||||| |    
T  41391514 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagtagtagataatgccaccacgg 41391613  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  41391614 attgttgatttgccttcca 41391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 19360583 - 19360465
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    |||||||||||| || |||| ||||||||| | ||||| |  || ||||||||| |||| | |||| ||||| ||| ||| |||||||   ||||||| |    
T  19360583 attcctaactcaacaatcatccctttcaaccatatggcatctttcaccccttcaacaagggcaatgtactccgcttgagtggtagataatgccaccacgg 19360484  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  19360483 attgttgatttgccttcca 19360465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 6794035 - 6793919
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| ||||||||||| |||||||||||| ||||    
T  6794035 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacactttatgattcgccaagtgaa 6793936  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  6793935 tgacactttgactatca 6793919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 1306789 - 1306905
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  1306789 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 1306888  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  1306889 tggcactttgactatca 1306905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 8513012 - 8513128
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  8513012 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 8513111  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  8513112 tggcactttgactatca 8513128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 22172477 - 22172361
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  22172477 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 22172378  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  22172377 tggcactttgactatca 22172361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 32476258 - 32476374
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  32476258 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 32476357  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  32476358 tggcactttgactatca 32476374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 2676389 - 2676273
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||||||||||  | ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  2676389 accacaatctcttttgtttcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 2676290  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  2676289 tggcactttgactatca 2676273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 3327657 - 3327541
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||   ||||   | |||||| || |||| |||||||||||||||||| ||||| ||||    
T  3327657 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagaaaatgtgaatgtgcttagtcctctcatgatacacttgatgatttgccaagtgaa 3327558  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  3327557 tggcactttgactatca 3327541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 2676245 - 2676127
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  2676245 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 2676146  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  2676145 attgttgatttgccttcca 2676127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 22172333 - 22172215
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| |||| |  ||| ||||| ||| |||||||||||   |||||||||    
T  22172333 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagcgcgatgtactccgcttgagttgtagataatgccaccacag 22172234  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  22172233 attgttgatttgccttcca 22172215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 32476402 - 32476520
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  32476402 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 32476501  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  32476502 attgttgatttgccttcca 32476520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 4386317 - 4386223
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaa 114  Q
    ||||||||||||||  || ||||||||||| | ||||||| |||  ||||| | | | ||||| | |||| ||||||||||||||||||||||||    
T  4386317 accacaatctctttcgattcaatcatgtctttcacaaagtgcaagcgaatgtcaatgggctttatcctctaatgatacacttgatgattcgccaa 4386223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 6793891 - 6793773
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||||| ||||| |  || || |||||| |||||| |||| ||| | ||| ||| |||||||   ||||||| |    
T  6793891 attcctaactcaccaatcatccctttcaacaatatggcctctttcactccttcaacaagtgcaatgtacttcgcttgagtggtagataatgccaccacgg 6793792  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  6793791 attgttgatttgccttcca 6793773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 8513156 - 8513274
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   |||||||      
T  8513156 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacga 8513255  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  8513256 attgttgatttgccttcca 8513274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 10595744 - 10595842
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatcat 137  Q
    ||||||||||||| || |||| |||| ||||| | | |||||||||||| | |||||| || | |||||| |||||||||| | || ||||||||||||    
T  10595744 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgttctttcatgatatacctaatgatttgccaaatgaatggcactttggctatcat 10595842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 10094802 - 10094899
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| | |||||||| | || |||||||||||    
T  10094802 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgtcaaatgaatggcactttggctatca 10094899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 10201688 - 10201785
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| | |||||||| | || |||||||||||    
T  10201688 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgtcaaatgaatggcactttggctatca 10201785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 47878885 - 47878982
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||| ||||| || | |||||| || |||||||| |||||||||| | || |||||||||||    
T  47878885 caatcatgtctcttacgaagtgcaaacgaatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 47878982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 54192693 - 54192596
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||| ||||| || | |||||| || |||||||| |||||||||| | || |||||||||||    
T  54192693 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 54192596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 26297301 - 26297417
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  26297301 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 26297400  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  26297401 tggcactttgactatca 26297417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 26310558 - 26310674
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  26310558 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 26310657  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  26310658 tggcactttgactatca 26310674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 33037102 - 33036986
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  33037102 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 33037003  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  33037002 tggcactttgactatca 33036986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 18869839 - 18869723
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  18869839 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 18869740  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  18869739 tggcactttgactatca 18869723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 26402494 - 26402378
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||  ||||| || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||| ||||||||||||||| ||||    
T  26402494 accacaattacttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacatttgatgattcgccaagtgaa 26402395  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  26402394 tgacactttgactatca 26402378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 34586893 - 34587009
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||| ||||| |||  ||||| | | |||||| || |||| |||||||||||||||||||||||| ||||    
T  34586893 accacaatctcttttgattcaatcatgtctctaataaagtgcaagcgaatgtcaatgtgcttagtcctctcatgatacacttgatgattcgccaagtgaa 34586992  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  34586993 tggcactttgactatca 34587009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 14602503 - 14602613
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| | || ||||||||||| ||||||| ||| ||||||||| |||| | |||| ||||| ||| | || |||||||| |||||||||    
T  14602503 attcctaactcaccaataatccctttcaacaatatggcttccttcaccccttcaacaagggcaatgtactccgcttgaattatagatagagccaccacag 14602602  T
Q  235 attgttgattt 245  Q
    |||||||||||    
T  14602603 attgttgattt 14602613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 19751704 - 19751605
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||| ||||||| || || ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  19751704 accataatctctcttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtgctctcatgatacacttgatgatttgccaagtgaa 19751605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 33036958 - 33036840
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||||||| |||||||||||   ||||||| |    
T  33036958 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccacttgagttgtagataatgccaccacgg 33036859  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  33036858 attgttgatttgccttcca 33036840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 28332080 - 28331983
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| |||| ||||||||| |||||||| |||||||||| | || |||||||||||    
T  28332080 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctctcatgatacacctgatgatttgccaaatgaatggcactttggctatca 28331983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 10688433 - 10688345
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgatt 108  Q
    ||||||||||||||| || ||||||||||||||||||||| ||    |||| ||| ||||||||| || | ||||||||||||||||||    
T  10688433 accacaatctcttttgattcaatcatgtctctaacaaagtgcagtctaatgtctatgtgctttgtcctttcatgatacacttgatgatt 10688345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 35741307 - 35741423
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||||||||||  | ||||||||||||| ||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  35741307 accacaatctcttttgtttcaatcatgtctctgacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 35741406  T
Q  120 cgacattttggctatca 136  Q
     | || |||||||||||    
T  35741407 tggcactttggctatca 35741423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 33494452 - 33494365
Alignment:
Q  21 ccacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgatt 108  Q
    ||||||| |||||| |  ||||||||||||||| ||||| |||| ||||| | | ||||||||| |||| ||||||||||||||||||    
T  33494452 ccacaatttcttttgactcaatcatgtctctaataaagtgcaaacgaatgtcaatgtgctttgtcctctaatgatacacttgatgatt 33494365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 10688289 - 10688171
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  10688289 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 10688190  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  10688189 attgttgatttgccttcca 10688171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 19751561 - 19751443
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||||||||||||| | |||||||  || ||||||||| |||| | |||  ||||| ||| |||||| ||||   ||||||| |    
T  19751561 attcctaactcaccaatcatacctttcaaccatatggcttctttcaccccttcaacaagggcaatatactccgcttgagttgttgataatgccaccacgg 19751462  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  19751461 attgttgatttgccttcca 19751443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 35741451 - 35741569
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  35741451 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 35741550  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  35741551 attgttgatttgccttcca 35741569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 4813222 - 4813319
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  4813222 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 4813319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 16753256 - 16753353
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  16753256 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 16753353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 25684092 - 25683995
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  25684092 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 25683995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 26268987 - 26269083
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatc 135  Q
    ||||||||||||||||||||| |||  ||||| | | ||| |||||||| | |||||  || |||||||| |||||||||| | || ||||||||||    
T  26268987 caatcatgtctctaacaaagtgcaagcgaatgtcaatgtgttttgttctttcatgatgtacatgatgatttgccaaatgaatggcactttggctatc 26269083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 18869695 - 18869577
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||  | ||| || |||||| ||||||   || ||||| ||| |||||||||||   ||||||| |    
T  18869695 attcctaactcaccaatcatccctttcaaccatatggtctccttcacaccttcaacaagtgcgttgtactccgcttgagttgtagataatgccaccacgg 18869596  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  18869595 attgttgatttgccttcca 18869577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 26297445 - 26297559
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| |  || || |||||| ||||||  ||| ||||| ||| ||| |||||||   ||||||| |    
T  26297445 attcctaactcaccaatcatccctttcaaccatatggcctctttcacaccttcaacaagtgcgatgtactccgcttgagtggtagataacgccaccacgg 26297544  T
Q  235 attgttgatttgctt 249  Q
    |||||||||||||||    
T  26297545 attgttgatttgctt 26297559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 26310702 - 26310816
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| |  || || |||||| ||||||  ||| ||||| ||| ||| |||||||   ||||||| |    
T  26310702 attcctaactcaccaatcatccctttcaaccatatggcctctttcacaccttcaacaagtgcgatgtactccgcttgagtggtagataacgccaccacgg 26310801  T
Q  235 attgttgatttgctt 249  Q
    |||||||||||||||    
T  26310802 attgttgatttgctt 26310816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 590262 - 590165
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||| ||||| || | |||||| || |||||||| |||||||||| | || |||||||||||    
T  590262 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 590165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 28894949 - 28894852
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||| ||| | || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  28894949 caatcatatctttgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 28894852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 28832977 - 28833093
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || |||||||||||| |||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||||||||| ||||    
T  28832977 accacaatctcttttgattcaatcatgtctcgaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgattcgccaagtgaa 28833076  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  28833077 tggcactttgactatca 28833093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 19589215 - 19589309
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaa 114  Q
    ||||||||||||||| || ||||||||||||||||||||| ||| |||||| | | |||||| || | || |||||||||||||||||| |||||    
T  19589215 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagtgaatgtcaatgtgcttagtcccctcatgatacacttgatgattagccaa 19589309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 43593039 - 43593155
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  43593039 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcgatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 43593138  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  43593139 tggcactttgactatca 43593155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 43625833 - 43625949
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  43625833 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcgatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 43625932  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  43625933 tggcactttgactatca 43625949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 31401017 - 31400899
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   |||||||||    
T  31401017 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacag 31400918  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  31400917 attgttgatttgccttcca 31400899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 33769101 - 33769219
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||| ||| ||||| ||| |||||||||||   ||||||| |    
T  33769101 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgtgatgtactccgcttgagttgtagataatgccaccacgg 33769200  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  33769201 attgttgatttgccttcca 33769219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 37560618 - 37560500
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| |||||| |||| ||||| ||| |||||||||||   ||||||| |    
T  37560618 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcaatgtactccgcttgagttgtagataatgccaccacgg 37560519  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  37560518 attgttgatttgccttcca 37560500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 31401161 - 31401073
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgatt 108  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | ||||||||||||||||||    
T  31401161 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatt 31401073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 33768957 - 33769073
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||||||||||  | ||||||||||||| ||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  33768957 accacaatctcttttgtttcaatcatgtctctgacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 33769056  T
Q  120 cgacattttggctatca 136  Q
     | || |||||||||||    
T  33769057 tggcactttggctatca 33769073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 27445751 - 27445850
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||| | ||||| ||||    
T  27445751 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcgatgtgctttgtcctttcatgatacacttgatgaattgccaagtgaa 27445850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 27445885 - 27446003
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  27445885 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 27445984  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  27445985 attgttgatttgccttcca 27446003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 43593183 - 43593301
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  43593183 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 43593282  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  43593283 attgttgatttgccttcca 43593301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 43625977 - 43626095
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  43625977 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 43626076  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  43626077 attgttgatttgccttcca 43626095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 28806747 - 28806629
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||  ||||| ||| |||||||||||   ||||||| |    
T  28806747 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatatactccgcttgagttgtagataatgccaccacgg 28806648  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  28806647 attgttgatttgccttcca 28806629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 28833121 - 28833239
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| ||||||| |  || || |||||| |||||| |||| ||||| ||| ||| |||||||    |||||| |    
T  28833121 attcctaactcaccaatcattcctttcaaccacatggcctctttcactccttcaacaagtgcaatgtactccgcttgagtggtagataatgtcaccacgg 28833220  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  28833221 attgttgatttgccttcca 28833239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 22828597 - 22828500
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatg 117  Q
    ||||||||||||||  || |||||||||||||||||| || ||  |||||| | | || || | | |||| ||||||||||||||||||| |||||||    
T  22828597 accacaatctctttaaattcaatcatgtctctaacaatgtgcaggtgaatgtcaatgtcctctatcctctcatgatacacttgatgattcaccaaatg 22828500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 37560762 - 37560674
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgatt 108  Q
    |||||||||||||||  | ||||||||||||| ||||||| ||   ||||| | | ||||||||| || | ||||||||||||||||||    
T  37560762 accacaatctcttttgtttcaatcatgtctctgacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatt 37560674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 25451942 - 25451845
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||| ||||| || | |||||| || |||||||| |||||||||| | || |||||||||||    
T  25451942 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaatggcactttggctatca 25451845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 3778356 - 3778472
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||| ||||||||||||| |||  ||||| | | | ||||||| |||| |||||||||||||||||||||||| ||||    
T  3778356 accacaatctcttttgattcaatcatatctctaacaaagtgcaagcgaatgtcaatgcgctttgtcctctcatgatacacttgatgattcgccaagtgaa 3778455  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  3778456 tgacactttgactatca 3778472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 6742705 - 6742589
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| |||  ||||| | | |||||| || |||| |||||||||||||||||||||||| ||||    
T  6742705 accacaatctcttttgattcaatcatgtctctaacaaagtgcaagcgaatgtcaatgtgcttagtcctctcatgatacacttgatgattcgccaagtgaa 6742606  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  6742605 tggcactttgactatca 6742589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 16628161 - 16628045
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    |||||||| |||||| || ||||||||||||||||||||| ||| |||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  16628161 accacaatatcttttgattcaatcatgtctctaacaaagtgcaagtgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 16628062  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  16628061 tggcactttgactatca 16628045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 18856494 - 18856610
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| || | ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  18856494 accacaatctcttttgattcaatcatgtctctaacaaagtgcagacgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 18856593  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  18856594 tggcactttgactatca 18856610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 3792299 - 3792186
Alignment:
Q  23 acaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacga 122  Q
    |||||||||||| || ||||||||||||||||||||| |||   |||| | | |||||| || |||| |||||||||||||||||||||||| |||| |     
T  3792299 acaatctcttttgattcaatcatgtctctaacaaagtgcaagcaaatgtcaatgtgcttagtcctctcatgatacacttgatgattcgccaagtgaatgg 3792200  T
Q  123 cattttggctatca 136  Q
    || |||| ||||||    
T  3792199 cactttgactatca 3792186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 9228498 - 9228385
Alignment:
Q  23 acaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacga 122  Q
    |||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| |||| |     
T  9228498 acaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaatgg 9228399  T
Q  123 cattttggctatca 136  Q
    || |||| ||||||    
T  9228398 cactttgactatca 9228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 9228357 - 9228239
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | || || | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   |||||||||    
T  9228357 attcctaactcaccaatcatccctttcaaccatatagcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacag 9228258  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  9228257 attgttgatttgccttcca 9228239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 18856638 - 18856756
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||| ||| | ||||| | ||| || |||||| |||||| |||| ||||| ||| |||||||||||   ||||||| |    
T  18856638 attcctaactcaccaatcatcccttttaaccatatggcctccttcacaccttcaacaagtgcaatgtactccgcttgagttgtagataatgccaccacgg 18856737  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  18856738 attgttgatttgccttcca 18856756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 4569528 - 4569431
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    |||| |||||||| || |||| |||||||||| | | ||| |||||||| | |||||| || |||||||| | |||||||| | || |||||||||||    
T  4569528 caattatgtctctgacgaagtgcaaatgaatgtcaatgtgttttgttctttcatgatatacctgatgatttgtcaaatgaatggcactttggctatca 4569431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 15316426 - 15316329
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| |||||   | |||||||||||| | |||||| |  |||||||| |||||||||| | || |||||||||||    
T  15316426 caatcatgtctcttacgaagtgcaaacgaatgttaatgtgctttgttctttcatgatatatctgatgatttgccaaatgaatggcactttggctatca 15316329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 16638344 - 16638268
Alignment:
Q  41 atcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatg 117  Q
    ||||||||||||||||||| |||| ||||| | | ||| |||||||| |  ||||| || |||||||| ||||||||    
T  16638344 atcatgtctctaacaaagtgcaaacgaatgtcaatgtgttttgttctttcttgatatacctgatgatttgccaaatg 16638268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 18409584 - 18409700
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||| ||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  18409584 accacaatctcttttgattcaatcatgtctctgacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaa 18409683  T
Q  120 cgacattttggctatca 136  Q
      ||| |||| ||||||    
T  18409684 ttacactttgactatca 18409700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 20000519 - 20000635
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| || | ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  20000519 accacaatctcttttgattcaatcatgtctctaacaaagtgcagacgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 20000618  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  20000619 tggcactttgactatca 20000635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 21984051 - 21984167
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||| ||||||||| || ||||||||||||| ||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||||||||| ||||    
T  21984051 accacgatctcttttgattcaatcatgtctcttacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgattcgccaagtgaa 21984150  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  21984151 tggcactttgactatca 21984167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 9189296 - 9189199
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||||||||||| |||  ||||| | | ||||||||| |||| |||||||||||||||||| ||||| |||| |||| |||| ||||||    
T  9189296 caatcatgtctctaacaaagtgcaagcgaatgtcaatgtgctttgtcctctcatgatacacttgatgatttgccaagtgaatgacactttgactatca 9189199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 12397677 - 12397793
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  12397677 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 12397776  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  12397777 tggcactttgactatca 12397793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 16880845 - 16880961
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  16880845 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 16880944  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  16880945 tggcactttgactatca 16880961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 21640608 - 21640724
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  21640608 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 21640707  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  21640708 tggcactttgactatca 21640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 24265492 - 24265376
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  24265492 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 24265393  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  24265392 tggcactttgactatca 24265376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 24276047 - 24275931
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||| ||||||| |||  ||||| | | || |||||| |||| |||||||||||||||||| ||||| ||||    
T  24276047 accacaatctcttttgattcaatcatgtctcttacaaagtgcaagcgaatgtcaatgtcctttgtcctctcatgatacacttgatgatttgccaagtgaa 24275948  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  24275947 tgtcactttgactatca 24275931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 21984195 - 21984313
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||||||||||||| | ||||| |  || ||||||||| || | |||||  ||||||||| |||||| ||||   |||||||||    
T  21984195 attcctaactcaccaatcatacctttcaaccatatggcctctttcaccccttcaacaggggtaatatactccacttgagttgttgataatgccaccacag 21984294  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  21984295 attgttgatttgccttcca 21984313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 16880989 - 16881107
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  16880989 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 16881088  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  16881089 attgttgatttgccttcca 16881107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 21640752 - 21640870
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  21640752 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 21640851  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  21640852 attgttgatttgccttcca 21640870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 24265348 - 24265230
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  24265348 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 24265249  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  24265248 attgttgatttgccttcca 24265230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 3320784 - 3320881
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | |||||||||||||||||| | |||||||| | || |||||||||||    
T  3320784 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttggcaaatgaatggcactttggctatca 3320881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 25404842 - 25404745
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  25404842 caatcatgtctctgacgaagtgcaaacgaatgtcaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 25404745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 3320924 - 3321027
Alignment:
Q  150 atcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacagattgttgatttgctt 249  Q
    ||||||||||||||| | ||||||| ||| ||||||||| |||| |  ||| ||||| ||| |||||| || ||| | || || |||||||||||||| |    
T  3320924 atcatacctttcaaccatatggcttccttgaccccttcaacaagggctatgtactccgcttgagttgttgaaagagctacaactgattgttgatttgcct 3321023  T
Q  250 tcca 253  Q
    ||||    
T  3321024 tcca 3321027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 18409728 - 18409846
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| |  || ||||||||| |||| | |||| ||||| ||| ||| |||||||   | ||||| |    
T  18409728 attcctaactcaccaatcatccctttcaaccatatggcctctttcaccccttcaacaagggcaatgtactccgcttgagtggtagataatgcaaccacgg 18409827  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  18409828 attgttgatttgccttcca 18409846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 7074236 - 7074139
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||  || |||| |||| |||||   | ||||||||| || | ||||||||| |||||||| |||||||||| | || |||||||||||    
T  7074236 caatcatgtctcggacgaagtgcaaacgaatgtaaatgtgctttgtcctttcatgatacacctgatgatttgccaaatgaatggcactttggctatca 7074139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 13599 - 13483
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  13599 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 13500  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  13499 tggcactttgactatca 13483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 18478 - 18362
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||||||||||||| || ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  18478 accacaatctcttttgattcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 18379  T
Q  120 cgacattttggctatca 136  Q
     | || |||| ||||||    
T  18378 tggcactttgactatca 18362  T

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Target: scaffold0197; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 13455 - 13337
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  13455 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 13356  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  13355 attgttgatttgccttcca 13337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 18334 - 18216
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||||||||   ||||||| |    
T  18334 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtagataatgccaccacgg 18235  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  18234 attgttgatttgccttcca 18216  T

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Target: scaffold1764 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 904 - 807
Alignment:
Q  39 caatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaacgacattttggctatca 136  Q
    ||||||||||||| || |||| |||| ||||| | | |||||||||||| | |||||| ||||||||||| |||||||||| | || |||||||||||    
T  904 caatcatgtctctgactaagtgcaaacgaatgtcaatgtgctttgttctttcatgatatacttgatgatttgccaaatgaatggcactttggctatca 807  T

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Target: scaffold0259 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 1554 - 1438
Alignment:
Q  20 accacaatctctttttatacaatcatgtctctaacaaagtacaaatgaatgcctacgtgctttgttctcttatgatacacttgatgattcgccaaatgaa 119  Q
    ||||| |||||||||  | ||||||||||||||||||||| ||   ||||| | | ||||||||| || | |||||||||||||||||| ||||| ||||    
T  1554 accacgatctcttttgcttcaatcatgtctctaacaaagtgcaggcgaatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaagtgaa 1455  T
Q  120 cgacattttggctatca 136  Q
     |||| |||| ||||||    
T  1454 tgacactttgactatca 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 1410 - 1292
Alignment:
Q  136 attcctaactcacca-tcatacctttcaacaacatggcttactttaccccttcagcaagtgtaatgcactccacttaagttgtagatagaaccaccacag 234  Q
    ||||||||||||||| |||| ||||||||| | ||||| | ||| || |||||| ||||||  ||| ||||| ||| |||||| ||||   ||||||| |    
T  1410 attcctaactcaccaatcatccctttcaaccatatggcctccttcacaccttcaacaagtgcgatgtactccgcttgagttgtggataatgccaccacgg 1311  T
Q  235 attgttgatttgctttcca 253  Q
    ||||||||||||| |||||    
T  1310 attgttgatttgccttcca 1292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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