View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11684_low_6 (Length: 250)
Name: NF11684_low_6
Description: NF11684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11684_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30517639 - 30517877
Alignment:
| Q |
1 |
caaaactgtgttggagcttcatcaaaaatcgtgtcgcggtttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcagcaaaaattg |
100 |
Q |
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| T |
30517639 |
caaaactgtgttggagcttcatcaaaaatcgtgtcgcggtttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcggcaaaaattg |
30517738 |
T |
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| Q |
101 |
tgccacgaagggaacaaatcgtgacacagtttagtggataacagtcaattcgtaccgtgtacaaactgaaaatggtggcatgatggtagaaaatcaggac |
200 |
Q |
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| T |
30517739 |
tgccacgaagggaagaaatcgtgacacaatttagtggataacgatcaatttgtattgtgtacaaactgaaaatggtggcatgatggtagaaaatcaggac |
30517838 |
T |
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| Q |
201 |
acaattttcttgggacctgtgtactatttaaggcttcat |
239 |
Q |
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| T |
30517839 |
acaattttcttgggacttgtgtactatttaaggcttcat |
30517877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 40964632 - 40964525
Alignment:
| Q |
40 |
tttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcagcaaaaattgtgccacgaagggaacaaatcgtgacacagtttagtggat |
139 |
Q |
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| T |
40964632 |
tttggtgaaatcatggcacgatttagttcaagttttggaggttttgtctcgacaaaaatcgtggaacaaagggaagatatcgcgacacgatttagtagat |
40964533 |
T |
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| Q |
140 |
aacagtca |
147 |
Q |
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||| |||| |
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| T |
40964532 |
aacggtca |
40964525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 18673970 - 18674032
Alignment:
| Q |
40 |
tttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcagcaaaaattgtg |
102 |
Q |
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| T |
18673970 |
tttggtgagatcgtgacacaatttggtttaggtttttgaggttttgtctcgacaaaaattgtg |
18674032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 5611710 - 5611565
Alignment:
| Q |
9 |
tgttggagcttcatcaaaaatcgtgtcgcggtttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcagcaaaaattgtgccacga |
108 |
Q |
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| T |
5611710 |
tgttgaagcttcgtcaaaaatcgtggtatgatttggtgagatcatgacatgatttggtttaggttttggaggttttgtctggacaaaaatcgtggcaaga |
5611611 |
T |
|
| Q |
109 |
agggaacaaatcgtgacacagtttagtggataacagtcaattcgtac |
155 |
Q |
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| T |
5611610 |
a-agaagaaattgtgacacgatttagtagataacggtcagttcgtac |
5611565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 21156997 - 21156852
Alignment:
| Q |
9 |
tgttggagcttcatcaaaaatcgtgtcgcggtttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcagcaaaaattgtgccacga |
108 |
Q |
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| T |
21156997 |
tgttgaagcttcgtcaaaaatcgtggtatgatttggtgagatcatgacatgatttggtttaggttttggaggttttgtctggacaaaaatcgtggcaaga |
21156898 |
T |
|
| Q |
109 |
agggaacaaatcgtgacacagtttagtggataacagtcaattcgtac |
155 |
Q |
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| T |
21156897 |
a-agaagaaattgtgacacgatttagtagataacggtcagttcgtac |
21156852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 3739643 - 3739539
Alignment:
| Q |
23 |
caaaaatcgtgtcgcggtttggtgaaatcatgacgcaatttggttcaggttttggaggttttgtctcagcaaaaattgtgccacgaagggaacaaatcgt |
122 |
Q |
| |
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||||||| |||| || ||||| ||||||||| | |||||||| ||||||||||||||||| ||| | ||||||||| | |||||||| ||||||| |
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| T |
3739643 |
caaaaattgtgtttcgatttggagaaatcatggcatgatttggttaaggttttggaggttttgactcgacgaaaattgtggctcgaagggataaaatcgt |
3739544 |
T |
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| Q |
123 |
gacac |
127 |
Q |
| |
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||||| |
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| T |
3739543 |
gacac |
3739539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 8863196 - 8863273
Alignment:
| Q |
65 |
gttcaggttttggaggttttgtctcagcaaaaattgtgccacgaagggaacaaatcgtgacacagtttagtggataaca |
143 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
8863196 |
gttctggttttggaggttttgtctcaacaaaagtcgtggtgcgaagggaa-gaatcgtgacacgatttagtggataaca |
8863273 |
T |
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