View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11685_high_10 (Length: 436)
Name: NF11685_high_10
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_high_10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 6302806 - 6302390
Alignment:
| Q |
20 |
tgtataaaagttgcttagcacatctttcacacactcccccaatttaacatctccatggactcggcaagcagaaagtagtgtgcgccatgaagtagcatca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6302806 |
tgtataaaagttgcttagcacatctttcacacactcccccaatttaacatctccatggactcgacaagcagaaagtagtgtgcgccatgaagtagcatca |
6302707 |
T |
|
| Q |
120 |
cctttaattggcaagctcttgattagctcaaatgcttcgtgtagcattccagctcgacccaagagatcaataagacatccataatgctcaacccacggtg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6302706 |
cctttaattggcaagctcttgattagctcaaatgcttcgtgtagcattccagctcgacccaagagatcaataagacatccataatgctcaacccacggtg |
6302607 |
T |
|
| Q |
220 |
aaaagccgtgttcctgaaccatgcacttaaaaaattcaaccccctcagtaacaagacctccatgactacaagcagttagaattgccaaaatggtgatttc |
319 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6302606 |
aaaagccgtgttcctgaaccatgcgcttaaaaaattcaaccccctcagtaacaagacctccatgactacaagcagttagaattgccaaaaaggtgatttc |
6302507 |
T |
|
| Q |
320 |
atttggtctaaacccttcattctccatcctattgaatagacttatggcattaattgcctgcccatgaattccatgacctgaaatcacggctgtccaagat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6302506 |
atttggtctaaacccttcattctccatcctattgaatagacttatggcattaattgcctgcccatgaattccatgacctgaaatcacggctgtccaagat |
6302407 |
T |
|
| Q |
420 |
ttcacatctttattttc |
436 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6302406 |
ttcacatctttattttc |
6302390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University