View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11685_high_13 (Length: 376)
Name: NF11685_high_13
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 23 - 364
Target Start/End: Complemental strand, 33618642 - 33618301
Alignment:
| Q |
23 |
aggtttagttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggt |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618642 |
aggtttagttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggt |
33618543 |
T |
|
| Q |
123 |
tagacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618542 |
tagacaaaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctac |
33618443 |
T |
|
| Q |
223 |
aatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgt |
322 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618442 |
aatattgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgt |
33618343 |
T |
|
| Q |
323 |
tgcactgatttcgcaatttctgtccacttgataagttcttct |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618342 |
tgcactgatttcgcaatttctgtccacttgataagttcttct |
33618301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 31 - 364
Target Start/End: Complemental strand, 33609459 - 33609126
Alignment:
| Q |
31 |
ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa |
130 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| | |
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|
| T |
33609459 |
ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacaca |
33609360 |
T |
|
| Q |
131 |
aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttga |
230 |
Q |
| |
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|||||||| |||||||||| ||||||||||| |||||| ||||| |||| || |||||||| || |||||||| |||||||| || || || ||||||| |
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| T |
33609359 |
aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttga |
33609260 |
T |
|
| Q |
231 |
tccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactga |
330 |
Q |
| |
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|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || || |
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| T |
33609259 |
tcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatactccctttttaatatggttttaaagggctcttggttaaccga |
33609160 |
T |
|
| Q |
331 |
tttcgcaatttctgtccacttgataagttcttct |
364 |
Q |
| |
|
||| |||| |||| | |||| |||||||||||| |
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|
| T |
33609159 |
ttttgcaagttctattgacttaataagttcttct |
33609126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 29 - 364
Target Start/End: Complemental strand, 33627851 - 33627516
Alignment:
| Q |
29 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
128 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||| |||||||| || | || ||||| ||| |||| |
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|
| T |
33627851 |
agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaataacagtagaagagacgaggatagatg |
33627752 |
T |
|
| Q |
129 |
aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgtt |
228 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||||| | | |||||| || |||| ||| ||||||||| |||||||| || || | |||||| |
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|
| T |
33627751 |
caaggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgtt |
33627652 |
T |
|
| Q |
229 |
gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcact |
328 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
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|
| T |
33627651 |
gatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagt |
33627552 |
T |
|
| Q |
329 |
gatttcgcaatttctgtccacttgataagttcttct |
364 |
Q |
| |
|
||||| ||||||| ||| || | |||||||||||| |
|
|
| T |
33627551 |
gattttgcaatttttgttgacctaataagttcttct |
33627516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 142 - 364
Target Start/End: Complemental strand, 33588632 - 33588410
Alignment:
| Q |
142 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
241 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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|
| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
|
| Q |
242 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
341 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | ||||||||| |||| |||||||||||||||| ||||| ||||| |
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|
| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33588433 |
T |
|
| Q |
342 |
ctgtccacttgataagttcttct |
364 |
Q |
| |
|
|||||||||| | ||||||||| |
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|
| T |
33588432 |
ctgtccacttaaagagttcttct |
33588410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 142 - 364
Target Start/End: Complemental strand, 33595804 - 33595582
Alignment:
| Q |
142 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
241 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
|
| Q |
242 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
341 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33595605 |
T |
|
| Q |
342 |
ctgtccacttgataagttcttct |
364 |
Q |
| |
|
|||||||||| | ||||||||| |
|
|
| T |
33595604 |
ctgtccacttaaagagttcttct |
33595582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 142 - 364
Target Start/End: Complemental strand, 33602935 - 33602713
Alignment:
| Q |
142 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
241 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
|
| Q |
242 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
341 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
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|
| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33602736 |
T |
|
| Q |
342 |
ctgtccacttgataagttcttct |
364 |
Q |
| |
|
|||||||||| | ||||||||| |
|
|
| T |
33602735 |
ctgtccacttaaagagttcttct |
33602713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 363
Target Start/End: Complemental strand, 33622658 - 33622491
Alignment:
| Q |
196 |
aaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctt |
295 |
Q |
| |
|
||||||||| |||||||| || || ||||||||| ||||||||| |||| |||| ||| |||||| || ||||| | | |||||| |||| || ||| |
|
|
| T |
33622658 |
aaagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctctt |
33622559 |
T |
|
| Q |
296 |
tttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttc |
363 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||| |||||| ||| |||| ||| ||||||| |
|
|
| T |
33622558 |
tttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttc |
33622491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 33622824 - 33622738
Alignment:
| Q |
35 |
cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataagg |
121 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| | ||||||||||||||||||||||| || ||||| || || || ||||||||| |
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|
| T |
33622824 |
cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaataacactagaggagataagg |
33622738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 33563045 - 33562979
Alignment:
| Q |
224 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
290 |
Q |
| |
|
||||||||||| || || ||||| |||| ||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
33563045 |
atgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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