View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_high_6 (Length: 469)
Name: NF11685_high_6
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_high_6 |
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| [»] scaffold1173 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 124 - 467
Target Start/End: Complemental strand, 11391556 - 11391205
Alignment:
| Q |
124 |
acaagatgtattttgtcaaactctatgttgctcttaaattgagcagatattcaagtnnnnnnnngtttatcaaatatacta--------gcatagccatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
11391556 |
acaagatgtattttgtcaaactctatgttgctcttaaatttagcagatattcaaataaaaaaaagtttatcaaatatactaatatactagcatagccatt |
11391457 |
T |
|
| Q |
216 |
gggattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattga |
315 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
11391456 |
gggattctttttttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatggggtcatctgataataaaatggataggttggaaagtattga |
11391357 |
T |
|
| Q |
316 |
agtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcata |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
11391356 |
agtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagtttgacacaactttcttaactcgcata |
11391257 |
T |
|
| Q |
416 |
ctgcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11391256 |
ctgcctttattggatcgatatcccccgataatgttaatttcttctctttcga |
11391205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 218 - 467
Target Start/End: Complemental strand, 11366863 - 11366614
Alignment:
| Q |
218 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
317 |
Q |
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| T |
11366863 |
gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag |
11366764 |
T |
|
| Q |
318 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
417 |
Q |
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|||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
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| T |
11366763 |
tggaataacttcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
11366664 |
T |
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| Q |
418 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
467 |
Q |
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|||||| |||||| |||||||| |||| ||| |||||||||||| |||| |
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| T |
11366663 |
acctttactggatcaatatccccagatactgtcaatttcttctctttcga |
11366614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 218 - 467
Target Start/End: Complemental strand, 11385409 - 11385160
Alignment:
| Q |
218 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
317 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
11385409 |
gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag |
11385310 |
T |
|
| Q |
318 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
417 |
Q |
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|||||||| ||||| ||| ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
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| T |
11385309 |
tggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
11385210 |
T |
|
| Q |
418 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
467 |
Q |
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|||||| |||||| |||||||| |||| ||| |||||||||||| |||| |
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| T |
11385209 |
acctttactggatcaatatccccagatactgtcaatttcttctctttcga |
11385160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 218 - 467
Target Start/End: Complemental strand, 11375571 - 11375322
Alignment:
| Q |
218 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
317 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
11375571 |
gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag |
11375472 |
T |
|
| Q |
318 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
417 |
Q |
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|||||||| ||||| ||| ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
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| T |
11375471 |
tggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
11375372 |
T |
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| Q |
418 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
467 |
Q |
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|||||| |||||| |||||||| |||| | | |||||||||||| |||| |
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| T |
11375371 |
acctttactggatcaatatccccagatactatcaatttcttctctttcga |
11375322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11391679 - 11391622
Alignment:
| Q |
1 |
ttgtgattagaaatagttgatggtgagatcaatttcttgtgatgtttttgcatgcttt |
58 |
Q |
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| T |
11391679 |
ttgtgattagaaatagttgatggtgagatcaatttcttgtgatgtttttgcatgcttt |
11391622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: scaffold1173
Description:
Target: scaffold1173; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 218 - 467
Target Start/End: Complemental strand, 2190 - 1941
Alignment:
| Q |
218 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
317 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| | ||||||| ||| | | ||||||||||||||||||||||||| | |||||||||||| |
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| T |
2190 |
gattcttttcttattatgcacatcaaacatagtagtaattttgaaaatatcgtggttgagtcatctgataataaaatggataggtgtcaaagtattgaag |
2091 |
T |
|
| Q |
318 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
417 |
Q |
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|||||||||||||| ||| ||||||| || ||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
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| T |
2090 |
tggaataacttcatttgtatttgttgaatccttcttcttatcttttaaaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
1991 |
T |
|
| Q |
418 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
467 |
Q |
| |
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||||||| |||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
1990 |
gcctttactggatcaatatcccccgataatgtcaatttcttctctttcga |
1941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 218 - 467
Target Start/End: Original strand, 17186719 - 17186968
Alignment:
| Q |
218 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
317 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||| | ||||||| ||| | || ||||||||||||||||||||||||| | ||||||||||| |
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| T |
17186719 |
gattgttttcttattatgcacatcaaacatagtagtaatattgaaaatatcgtggttgggtcatctgataataaaatggataggtgtcaaagtattgaac |
17186818 |
T |
|
| Q |
318 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
417 |
Q |
| |
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|||||||||||||| ||| ||||||| || |||||||| ||||||| ||||||||| || |||| ||||||| ||||||||||||||| |||||| ||| |
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| T |
17186819 |
tggaataacttcatttgtatttgttgaatccttcttctcatcttttaaaggtccaattgatactatttcagtttgacacaactttcttagcttgcacact |
17186918 |
T |
|
| Q |
418 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
467 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
17186919 |
gcctttacaggatcaatatcccccgataatgtcaatttcttctctttcga |
17186968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 245 - 462
Target Start/End: Original strand, 17192629 - 17192846
Alignment:
| Q |
245 |
catagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaagtggaataacttcatgtgtgattgttga |
344 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
17192629 |
cataatagtaatcttgaaaatattgtgatggggtcatctgataataaaatggataggtttcaaagtattgaagtggaataacttcatttgtatttgttga |
17192728 |
T |
|
| Q |
345 |
ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatactgcctttattggatcgatatcccccgat |
444 |
Q |
| |
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| |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| ||| | ||||| ||||| |||||||| ||| |
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| T |
17192729 |
ccctttcttctcttcttttagaggtccaattgaaactatttcagtttgacacaactttcttagcttgcacactccttttatcggatcaatatcccctgat |
17192828 |
T |
|
| Q |
445 |
aatgttaatttcttctct |
462 |
Q |
| |
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| ||| |||||||||||| |
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| T |
17192829 |
attgtcaatttcttctct |
17192846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 17854578 - 17854520
Alignment:
| Q |
345 |
ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttc |
403 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||| ||| |||||||||||| |
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|
| T |
17854578 |
ctctttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttc |
17854520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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