View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11685_high_8 (Length: 467)
Name: NF11685_high_8
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 38886995 - 38886540
Alignment:
| Q |
1 |
tctttttcttacactttccctatcactgcgactgcttctggtgttagcaccaacataactactgctccttacaccactacttctactactccatggatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886995 |
tctttttcttacactttccctatcactgctactgcttctggtgttagcaccaacataactactgctccttacaccactacttctactactccatggatga |
38886896 |
T |
|
| Q |
101 |
acagcagaatatggagtaagcttccacagagactacttgatcgcatcatagctttccttcctccaccagctttcttccgtgcacgttctgtctgcaagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886895 |
acagcagaatatggagtaagcttccacagagactacttgatcgcatcatagctttccttcctccaccagctttcttccgtgcacgttctgtctgcaagag |
38886796 |
T |
|
| Q |
201 |
attctactctcttctcttttccaactctttccttgaattataccttcaagtttcacctcgtttccactggttcatcttcttcaaacacaaaaccagatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886795 |
attctactctcttctcttttccaactctttccttgaattataccttcaagtttcacctcgtttccactggttcatcttcttcaaacacaaaaccagatca |
38886696 |
T |
|
| Q |
301 |
aaaactcacatctacaaaaacagtaacaacatcactgatagtacttcctttgaaggctacctctttgatccaaatgaaatgacatggtaccgtatttcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38886695 |
aaaactcacatctacaaaaacagtaacaacatcactgatagtacttcctttgaaggctacctctttgatcctaatgaaatgacgtggtaccgtatttcat |
38886596 |
T |
|
| Q |
401 |
ttgctttaatcccttctggtttctcaccatcttcttcatcctcaggtttagtctgt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886595 |
ttgctttaatcccttctggtttctcaccatcttcttcatcctcaggtttagtctgt |
38886540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University