View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11685_low_12 (Length: 416)

Name: NF11685_low_12
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11685_low_12
NF11685_low_12
[»] chr3 (4 HSPs)
chr3 (19-191)||(49513119-49513295)
chr3 (190-247)||(2741030-2741087)
chr3 (190-247)||(28979963-28980018)
chr3 (190-247)||(28787305-28787362)
[»] chr4 (4 HSPs)
chr4 (188-247)||(38641256-38641315)
chr4 (190-247)||(16639641-16639698)
chr4 (190-223)||(38862430-38862463)
chr4 (19-53)||(27744315-27744349)
[»] scaffold0129 (1 HSPs)
scaffold0129 (190-247)||(29193-29250)
[»] scaffold0096 (1 HSPs)
scaffold0096 (190-223)||(44428-44461)
[»] chr8 (1 HSPs)
chr8 (190-224)||(29129259-29129293)
[»] chr5 (1 HSPs)
chr5 (190-223)||(31145209-31145242)
[»] chr1 (1 HSPs)
chr1 (190-247)||(18851570-18851627)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 49513295 - 49513119
Alignment:
Q  19 ctacaaaccgaggatcactgataagcttcttcttcctctt---atgttgtttttctttcattgaaaacaacaaccacgacttcataccaaatatgtgttg 115  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49513295 ctacaaaccgaggatcattgataagcttcttcttcctcttcttatgttgtttttctttcattgaaaacaacaaccacgacttcataccaaatatgtgttg 49513196  T
Q  116 tagc-aaatcttagtttcacctgtaacaattttttgacaccactttatttaccttttgtcgaattatcagcattgat 191  Q
    || | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  49513195 taacaaaatcttagtttcacctgcaacaattttttgacaccactttatttaccttttgtcgaattatcggccttgat 49513119  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 2741087 - 2741030
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    |||||||||||||||||||||||  |||||||| |  |||||||||||| ||||||||    
T  2741087 atcttacttacttaaaatcaaaggtagtctgataggagttaatccctaaccctaattg 2741030  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 28979963 - 28980018
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    ||||||||||||||||||  ||||||||||||||   |||||||||||| ||||||||    
T  28979963 atcttacttacttaaaat--aagaaagtctgattagagttaatccctaaccctaattg 28980018  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 28787362 - 28787305
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    |||||||||||||||||||||||  ||| |||| |  |||||||||||| ||||||||    
T  28787362 atcttacttacttaaaatcaaaggtagtttgataggagttaatccctaaccctaattg 28787305  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 38641256 - 38641315
Alignment:
Q  188 tgatcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    |||||||||||||||||||||||||  |||||||||   |||||||||||| ||||||||    
T  38641256 tgatcttacttacttaaaatcaaaggtagtctgattagagttaatccctaaccctaattg 38641315  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 16639641 - 16639698
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    |||||||||||||||||||||||  |||||||| |  |||||||||||| ||||||||    
T  16639641 atcttacttacttaaaatcaaaggtagtctgataggagttaatccctaaccctaattg 16639698  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 38862463 - 38862430
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgatt 223  Q
    ||||||||||||||||||||||||||||||||||    
T  38862463 atcttacttacttaaaatcaaagaaagtctgatt 38862430  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 27744349 - 27744315
Alignment:
Q  19 ctacaaaccgaggatcactgataagcttcttcttc 53  Q
    ||||||| |||||||||||||||||||||||||||    
T  27744349 ctacaaatcgaggatcactgataagcttcttcttc 27744315  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 29193 - 29250
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    ||||||||||||||||||| |||| |||||||||   |||||||||||| ||||||||    
T  29193 atcttacttacttaaaatctaagacagtctgattagagttaatccctaaccctaattg 29250  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 44428 - 44461
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgatt 223  Q
    ||||||||||||||||||||||||||||||||||    
T  44428 atcttacttacttaaaatcaaagaaagtctgatt 44461  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 29129293 - 29129259
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattg 224  Q
    |||||||||||||||||||||||||||| ||||||    
T  29129293 atcttacttacttaaaatcaaagaaagtttgattg 29129259  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 31145209 - 31145242
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgatt 223  Q
    |||||||||||||||||||||||||||| |||||    
T  31145209 atcttacttacttaaaatcaaagaaagtatgatt 31145242  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 18851627 - 18851570
Alignment:
Q  190 atcttacttacttaaaatcaaagaaagtctgattgttgttaatccctaaacctaattg 247  Q
    |||||||||||||||||||||||  ||| |||| |  |||||||||||| ||||||||    
T  18851627 atcttacttacttaaaatcaaaggtagtttgataggagttaatccctaaccctaattg 18851570  T

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