View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_13 (Length: 407)
Name: NF11685_low_13
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 53614491 - 53614889
Alignment:
| Q |
1 |
tttggaaggaagtcaaacaaattagtaactatcaattacacttttaagtttaagcacagtgcaatagtttttgaatttctacctttccaggatgcggttc |
100 |
Q |
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| T |
53614491 |
tttggaaggaagtcaaacaaattagtaactatcaattacacttttaagtttaagcacagtgcaatagttcttgaatttctacctttccaggatgcggttc |
53614590 |
T |
|
| Q |
101 |
aagtattttcgcaattagtttcttttgactttgagtaaaccaaggggcacatacgtattccgctctgcatatcttttttaacacatgaaagttacaagaa |
200 |
Q |
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| T |
53614591 |
aagtattttcgcaattagtttcttttgactttgagtaaaccaaggggcacatacgtattccgctctgcatatcttttttaacacatgaaagttacaagaa |
53614690 |
T |
|
| Q |
201 |
aatgagaattagttgaatcaaacactaggtgttttctttgttatcttcatgattatatggtatactatattcacatatataccttatggtataaatttat |
300 |
Q |
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| T |
53614691 |
aatgagaattagttgaatcaaacactaggtgttttctttattatcttcatgattatatggtatactatattcacatatataccttatggtataaatttat |
53614790 |
T |
|
| Q |
301 |
caagttctggtcatcaaatggtagaaaaccggcaagtaactcaaaaagaatcaccccacatgaccaaacatcagcagatgctccatcataccctttgct |
399 |
Q |
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| T |
53614791 |
caagttctggtcatcaaatggtagaaaaccggcaagtaactcaaaaagaatcaccccacatgaccaaacatcagcagatgctccatcataccctttgct |
53614889 |
T |
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