View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_15 (Length: 362)
Name: NF11685_low_15
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 36684867 - 36685022
Alignment:
| Q |
60 |
aaaggttttgtaactctgatgatagtcatctgcaagttgaagtgttccatgtgaggaggcttgaagtactccaaaatagtagcctcccaggtttcttggt |
159 |
Q |
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| T |
36684867 |
aaaggttttgtaactctgatgatagtcatctgcaagttgaagtgttccatgtgaggaggcttgaagtactccaaaatagtagcctaccagctttcttggt |
36684966 |
T |
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| Q |
160 |
acaatggttaagagtcatatataatccctaatcaaaattatcaaaattataaagtcat |
217 |
Q |
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| T |
36684967 |
acaatggttaagggtc--atataagccctaatcaaaattatcaaaattataaagtcat |
36685022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 36685079 - 36685203
Alignment:
| Q |
223 |
tccttgactttgccttcattaaacgatgcaatcaaaaaagccttagtatatgtcgtcaacaattgttggaacgagagagagtccttccaaccttggtcag |
322 |
Q |
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| T |
36685079 |
tccttgactttgccttcattaaacgatgcaatcaaaa-agccttagtatatgtcgtcaacaattgttggaacgagagagagtccttccaaccttggtcag |
36685177 |
T |
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| Q |
323 |
ggcgcttctgtctgagaaaagttttt |
348 |
Q |
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| T |
36685178 |
ggcgcttctgtctgagaaaagttttt |
36685203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 36684207 - 36684241
Alignment:
| Q |
31 |
agttaccttattataaacgttttgactttaaaggt |
65 |
Q |
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| T |
36684207 |
agttaccttattataaacgttttgactttaaaggt |
36684241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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