View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_16 (Length: 343)
Name: NF11685_low_16
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_16 |
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| [»] scaffold0572 (1 HSPs) |
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| [»] scaffold0620 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 8803313 - 8802988
Alignment:
| Q |
1 |
tatattagtgatcggagggtgtatataacacgaaaaataaattatagactgtaggcatttgcatgggttcaaatcttgaactctatgacctaaatttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8803313 |
tatattagtgatcggagggtgtatataacacgaaaaataaattatagactgtaggcatttgcatgggttcaaatcttgaactctatgacctaaatttagg |
8803214 |
T |
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| Q |
101 |
tatgtattgatcattcatgatggagttggaggttttggctcaagtttggtttatggtgcatgggggtttagcttggttttggatatttgattttattggt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8803213 |
tatgtattgatcattcgtgatggagttggaggttttggctcaagtttggtttatggtgcatgggggtttagcttggttttggagatttgattttattggt |
8803114 |
T |
|
| Q |
201 |
gttggtggtagccctcgattgggtcatggtgtttatgttgaatgaggtgtataaattttcttttgggtgttctgcctatatacggcgtgatttgctttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8803113 |
gttggtggtagccctcgattgggtcatggtgtttatgttgaatgaggcgtataaattttcttttgggtgttctgcctatatacggcgtcatttgctttgt |
8803014 |
T |
|
| Q |
301 |
tgtttctatcttgctggtctttgttt |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
8803013 |
tgtttctatcttgctggtctttgttt |
8802988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 35806753 - 35806808
Alignment:
| Q |
228 |
ggtgtttatgttgaatgaggtgtataaattttcttttgggtgttctgcctatatac |
283 |
Q |
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| T |
35806753 |
ggtgtttatgatgaatgaggtgtatgaattttcttttgggtcatccgcctatatac |
35806808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 35806606 - 35806650
Alignment:
| Q |
111 |
tcattcatgatggagttggaggttttggctcaagtttggtttatg |
155 |
Q |
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| T |
35806606 |
tcattcaccatggagttgggggttttgactcaagtttggtttatg |
35806650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 5926 - 5860
Alignment:
| Q |
243 |
tgaggtgtataaattttcttttgggtgttctgcctatatacggcgtgatttgctttgttgtttctat |
309 |
Q |
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| T |
5926 |
tgaggtgtatgaattttcttttgggtgttcagcctatatacaatgtcatttgctttgttgtttctat |
5860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 20970076 - 20970010
Alignment:
| Q |
243 |
tgaggtgtataaattttcttttgggtgttctgcctatatacggcgtgatttgctttgttgtttctat |
309 |
Q |
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| T |
20970076 |
tgaggtgtatgaattttcttttgggtgttcagcctatatacaatgtcatttgctttgttgtttctat |
20970010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 9238579 - 9238522
Alignment:
| Q |
256 |
ttttcttttgggtgttctgcctatatacggcgtgatttgctttgttgtttctatcttg |
313 |
Q |
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|||||||||| |||||||||||||||| | | | ||||||||||||||||||||||| |
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| T |
9238579 |
ttttcttttgagtgttctgcctatatatgacatcttttgctttgttgtttctatcttg |
9238522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 34105782 - 34105823
Alignment:
| Q |
244 |
gaggtgtataaattttcttttgggtgttctgcctatatacgg |
285 |
Q |
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||||||||| |||||||||||||||||| |||||||||||| |
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| T |
34105782 |
gaggtgtatgaattttcttttgggtgtttcgcctatatacgg |
34105823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 34105617 - 34105661
Alignment:
| Q |
111 |
tcattcatgatggagttggaggttttggctcaagtttggtttatg |
155 |
Q |
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||||||| |||| |||||||||||| |||||||||||||||||| |
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| T |
34105617 |
tcattcacgatgaagttggaggtttaagctcaagtttggtttatg |
34105661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 14724460 - 14724503
Alignment:
| Q |
112 |
cattcatgatggagttggaggttttggctcaagtttggtttatg |
155 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
14724460 |
cattcacgatggagttggaggttttgactcaagtttggtttatg |
14724503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 19947616 - 19947577
Alignment:
| Q |
244 |
gaggtgtataaattttcttttgggtgttctgcctatatac |
283 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
19947616 |
gaggtgtataagatttcttttgggtgttctgcctatatac |
19947577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 32159944 - 32159899
Alignment:
| Q |
173 |
ttggttttggatatttgattttattggtgttggtggtagccctcga |
218 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
32159944 |
ttggttttggaggtttgtttttattggtgttggtggtagccctcga |
32159899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 6273 - 6313
Alignment:
| Q |
244 |
gaggtgtataaattttcttttgggtgttctgcctatatacg |
284 |
Q |
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| T |
6273 |
gaggtgtatgaattttcttttgggtgttccgcctatatacg |
6313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 4208 - 4273
Alignment:
| Q |
244 |
gaggtgtataaattttcttttgggtgttctgcctatatacggcgtgatttgctttgttgtttctat |
309 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| || |||| ||||||||| |||| |
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| T |
4208 |
gaggtgtatgaattttcttttgggtgtttcgcctatatacgacgccctttgttttgttgttcctat |
4273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 930655 - 930620
Alignment:
| Q |
250 |
tataaattttcttttgggtgttctgcctatatacgg |
285 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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| T |
930655 |
tataaattttcttttgggtgttccgcctatatacgg |
930620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 285
Target Start/End: Original strand, 30655983 - 30656013
Alignment:
| Q |
255 |
attttcttttgggtgttctgcctatatacgg |
285 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30655983 |
attttcttttgggtgttctgcctatatacgg |
30656013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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