View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_17 (Length: 340)
Name: NF11685_low_17
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 21243828 - 21243505
Alignment:
| Q |
1 |
tgatgcttttcaacttctaggaatgtgcaagatggaattgcttcctgctgattctcatcaagatcggtaatgttttatgtcatgcatcaataccctcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21243828 |
tgatgcttttcaacttctaggaatgtgcaagatggaattgcttcctgctgattctcatcaaggtcggtaatgttttatgtcatgcatcaataccctcttt |
21243729 |
T |
|
| Q |
101 |
ctctatcctaagcagaaatgaaactaaattctagtatgatcaaactgatgataccctcttgtatagtatctttcttttaattagattgtatataagcaac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243728 |
ctctatcctaagcagaaataaaactaaattctagtatgatcaaactgatgataccctcttgtatagtatctttcttttaattagattgtatataagcaac |
21243629 |
T |
|
| Q |
201 |
aaggttatctgttttggaaaatagatgaagctttgaaaattctccttaaaggaatttgtagtttctgtagtacctacaattagtcttaattgagcggtag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21243628 |
aaggttatctgttttggaaaatagatgaagctttgaaaattctccttaaaggaatttgtagtttctgtagtacctacaattagtcttaattgagtggtag |
21243529 |
T |
|
| Q |
301 |
aagaatacaatttagccaaataac |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
21243528 |
aagaatacaatttagccaaataac |
21243505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 254520 - 254293
Alignment:
| Q |
1 |
tgatgcttttcaacttctaggaatgtgcaagatggaattgcttcctgctg-attctcatcaagatcggtaat---gttttatgtc---atgc-----atc |
88 |
Q |
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|||||||||||||||||| |||||| ||||||||| ||||||||| |||| |||||||||||| || ||||| |||||||||| ||| ||| |
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| T |
254520 |
tgatgcttttcaacttcttggaatgagcaagatgggattgcttccagctgtattctcatcaaggtcagtaataatgttttatgtctcaatggtcaatatc |
254421 |
T |
|
| Q |
89 |
aataccctctttctctatcctaagcagaaatgaaactaaa-ttctagtatgatcaaactgatgataccctcttgtatagtatctttcttttaattagatt |
187 |
Q |
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|||||||||||||||| ||| | | | ||||||||||||| ||| | |||||| | | ||||||||||||||| ||||||||||||||| |
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| T |
254420 |
aataccctctttctctttcccaggtacaaatgaaactaaaattcaactatgatgatattgatgataccctctt------------tcttttaattagatt |
254333 |
T |
|
| Q |
188 |
gtatataagcaacaaggttatctgttttggaaaatagatg |
227 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||| |
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| T |
254332 |
gtatgtaagcaacaaggttatctgttttgaaaaatagatg |
254293 |
T |
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