View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_2 (Length: 579)
Name: NF11685_low_2
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 129 - 560
Target Start/End: Complemental strand, 34377775 - 34377343
Alignment:
| Q |
129 |
aacggtgtgtttcataaaagaagttgattggataaaaaa-tttgatgtgtgatagtgtactaagaaggaaaaagttataataattcatacctcacaccaa |
227 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
34377775 |
aacggtgtgtttcataaaagaagttgcttggataaaaaaatttgatgtgtgatagtgtactaagaaggagaaagttgtaataattcatacctcacaccaa |
34377676 |
T |
|
| Q |
228 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctct-tcaagacctggagtg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | || |||||||||| |
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| T |
34377675 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaat-tctataaatacctggagtg |
34377577 |
T |
|
| Q |
327 |
tataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagcttt |
426 |
Q |
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|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||| |||||| |
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| T |
34377576 |
tacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagcttt |
34377477 |
T |
|
| Q |
427 |
cactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
526 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377476 |
cactgaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
34377377 |
T |
|
| Q |
527 |
ctccttcatcttctcgcattcagacacacgaatc |
560 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |
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|
| T |
34377376 |
ctccttcatcttctcgcattcagacacatgaatc |
34377343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 200 - 560
Target Start/End: Original strand, 34549677 - 34550037
Alignment:
| Q |
200 |
agttataataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttct |
299 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34549677 |
agttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttct |
34549776 |
T |
|
| Q |
300 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
34549777 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggca |
34549876 |
T |
|
| Q |
400 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagcttt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||| |
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| T |
34549877 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagcttt |
34549976 |
T |
|
| Q |
500 |
ctgttgtaaacaattattcccaatgatctccttcatcttctcgcattcagacacacgaatc |
560 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34549977 |
ctgttgtgaacaattattcctaatgatctccttcatcttctcgcattcagacacacgaatc |
34550037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 34377891 - 34377810
Alignment:
| Q |
17 |
gaggagcagagagtgacgtagaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
98 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377891 |
gaggaacagagagtgacgtagaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
34377810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 214 - 513
Target Start/End: Complemental strand, 135193 - 134895
Alignment:
| Q |
214 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttc |
313 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| || | |||| || | |
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| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
|
| Q |
314 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaa |
413 |
Q |
| |
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||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||| | |||| ||| | ||||| ||||||||||| ||||||| |
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| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaa |
134995 |
T |
|
| Q |
414 |
gggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaat |
513 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||| ||| || ||| | | || ||||||||||| |||||||||||||||| ||||| |
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| T |
134994 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaat |
134895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 6111151 - 6111193
Alignment:
| Q |
25 |
gagagtgacgtagaatgggaagggaaaatgaatgaaggaaata |
67 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6111151 |
gagagtgaagtagaatgggaagggaaaatgaatgaaggaaata |
6111193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 134883 - 134838
Alignment:
| Q |
510 |
caattattcccaatgatctccttcatcttctcgcattcagacacac |
555 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
134883 |
caattattcccaatgatctccttcatcttctggcattcatacacac |
134838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 555
Target Start/End: Complemental strand, 157400 - 157356
Alignment:
| Q |
511 |
aattattcccaatgatctccttcatcttctcgcattcagacacac |
555 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
157400 |
aattattcccaatgatctccttcatcttctggcattcatacacac |
157356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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