View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11685_low_20 (Length: 325)

Name: NF11685_low_20
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11685_low_20
NF11685_low_20
[»] chr7 (7 HSPs)
chr7 (1-149)||(25127852-25128000)
chr7 (172-320)||(25126566-25126714)
chr7 (172-319)||(7015599-7015746)
chr7 (172-319)||(7030957-7031104)
chr7 (172-319)||(7064585-7064732)
chr7 (179-286)||(7060143-7060250)
chr7 (104-144)||(38123796-38123836)
[»] scaffold1302 (1 HSPs)
scaffold1302 (172-286)||(854-968)
[»] chr5 (2 HSPs)
chr5 (100-144)||(15368136-15368180)
chr5 (100-144)||(37121478-37121522)
[»] chr3 (3 HSPs)
chr3 (100-144)||(52925759-52925803)
chr3 (100-144)||(25129670-25129714)
chr3 (103-139)||(35253557-35253593)
[»] chr8 (2 HSPs)
chr8 (100-144)||(4950378-4950422)
chr8 (100-144)||(41614737-41614781)
[»] chr6 (2 HSPs)
chr6 (104-140)||(19601714-19601750)
chr6 (100-144)||(29240600-29240644)
[»] chr2 (1 HSPs)
chr2 (100-144)||(7629755-7629799)
[»] chr1 (1 HSPs)
chr1 (100-144)||(20721063-20721107)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 25128000 - 25127852
Alignment:
Q  1 tcactcccattatttcttttttaatgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactcatcaatgaatagtgattct 100  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25128000 tcactcccattattttttttttactgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactcatcaatgaatagtgattct 25127901  T
Q  101 gtatgtttggttccatttttggaggcgtcaaaattgattctagaaattg 149  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25127900 gtatgtgtggttccatttttggaggcgtcaaaattgattctagaaattg 25127852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 172 - 320
Target Start/End: Complemental strand, 25126714 - 25126566
Alignment:
Q  172 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25126714 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattaaggaggcaacgaaagtgagcttcaattcacgaaatatattatccaaaatg 25126615  T
Q  272 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatct 320  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  25126614 caacagtcttgagcagtgtcaagatttacagaaatacctcttcaaatct 25126566  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 7015746 - 7015599
Alignment:
Q  172 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 271  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7015746 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7015647  T
Q  272 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 319  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7015646 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7015599  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 7031104 - 7030957
Alignment:
Q  172 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 271  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7031104 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7031005  T
Q  272 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 319  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7031004 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7030957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 7064732 - 7064585
Alignment:
Q  172 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 271  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7064732 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7064633  T
Q  272 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 319  Q
    ||||  |||||||||   |||  || |||| |||||||||||||||||    
T  7064632 caactctcttgcgcaacgtcaccatctacacaaatacctcttcaaatc 7064585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 7060250 - 7060143
Alignment:
Q  179 aatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatgcaacagt 278  Q
    ||||| |||||| ||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||||||  |    
T  7060250 aatgcatttcattacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatgcaactct 7060151  T
Q  279 cttgcgca 286  Q
    ||||||||    
T  7060150 cttgcgca 7060143  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 38123836 - 38123796
Alignment:
Q  104 tgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctaga 38123796  T

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Target: scaffold1302 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold1302
Description:

Target: scaffold1302; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 968 - 854
Alignment:
Q  172 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 271  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  968 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 869  T
Q  272 caacagtcttgcgca 286  Q
    ||||  |||||||||    
T  868 caactctcttgcgca 854  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 15368136 - 15368180
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctaga 15368180  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 37121478 - 37121522
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||    
T  37121478 tgtatgtttggttccatttgtagaggagccaaaattgattctaga 37121522  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 52925803 - 52925759
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||    
T  52925803 tgtatgttcggttccacttttggaggagtcaaaattgattctaga 52925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 25129714 - 25129670
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    ||||||||||||| || |||| |||| ||||||||||||||||||    
T  25129714 tgtatgtttggtttcaattttcgaggggtcaaaattgattctaga 25129670  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 35253593 - 35253557
Alignment:
Q  103 atgtttggttccatttttggaggcgtcaaaattgatt 139  Q
    ||||||||||||||||||||||| | |||||||||||    
T  35253593 atgtttggttccatttttggaggtgccaaaattgatt 35253557  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 4950378 - 4950422
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  4950378 tgtatgtttggttccaattttggaggtgctaaaattgattctaga 4950422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 41614737 - 41614781
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    ||||||||||||||||||| || ||| | ||||||||||||||||    
T  41614737 tgtatgtttggttccatttgtgtaggagccaaaattgattctaga 41614781  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 19601714 - 19601750
Alignment:
Q  104 tgtttggttccatttttggaggcgtcaaaattgattc 140  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  19601714 tgtttggttccacttttggaggagtcaaaattgattc 19601750  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 29240644 - 29240600
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    |||||||||||||||| |||||| ||  |||||||||||||||||    
T  29240644 tgtatgtttggttccacttttgggggaatcaaaattgattctaga 29240600  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 7629755 - 7629799
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||    
T  7629755 tgtatgtttggttccacttttggaggagccaagattgattctaga 7629799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 20721107 - 20721063
Alignment:
Q  100 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 144  Q
    ||||||||| |||||| |||||||||  |||||||||||||||||    
T  20721107 tgtatgttttgttccacttttggaggaatcaaaattgattctaga 20721063  T

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