View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_21 (Length: 313)
Name: NF11685_low_21
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 53614432 - 53614135
Alignment:
| Q |
1 |
tataagcctatttgtgcatatgaatttgatccgatcattaacttggatgatgatagttgtgctttcaattcaattgaggtaatttgttaccaaatagtag |
100 |
Q |
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| T |
53614432 |
tataagcctatttgtgcgtatgaatttgatccgatcattaacttggatgatgatagttgtgctttcaattcaattgaggtaatttgctaccaaatagcag |
53614333 |
T |
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| Q |
101 |
tcatagaaaacactcaattggagttatgaaccaaattgtctgactatatgtgctataggagaaaactacaaagccaaggataaccaagtcttctagcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53614332 |
tcatagaaaacactcaattggagttatgaaccaaattgtctgactatatgtgctataggagaaaactacaaagccaaggataaccaagtcttcaagcttc |
53614233 |
T |
|
| Q |
201 |
attaacgcgtttcaactgatagccatgtttcaggactttgatttattcaccctttttgaagaacaggcaagtctacaaatctgaaaggtatttaaatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53614232 |
attaacgcgtttcaactgatagccatgtttcaggactttgatttattcaccctttttgaagaacaggcaagtctacaaatctgaaaggtatttaaatt |
53614135 |
T |
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