View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_22 (Length: 302)
Name: NF11685_low_22
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 6817898 - 6817610
Alignment:
| Q |
19 |
tgtttttacaatattttatctgcaactatatgtctattattttgttagnnnnnnnctatatatttgttgcttgtatacgcattctaaattct-------- |
110 |
Q |
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| T |
6817898 |
tgtttttacaatattttatctgcaactatatgtctattattttgttagaaaaaaactatatatttgttgcatgtatacgcattctaaattctgttctaaa |
6817799 |
T |
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| Q |
111 |
----attagccgtcgtcatggatcatggacaccnnnnnnntcatggatcatggagtacttatctacttccaaaatccccaaataagctacggttcaatca |
206 |
Q |
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| T |
6817798 |
ttctattagccgtcgtcatggatcatggacaccaaaaaaatcatggatcatggagtactcatctacttccaaaatccccaaataagctacggttcaatca |
6817699 |
T |
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| Q |
207 |
ttatgtcaa----nnnnnnnctttccgaatcactatgtattgattcaatagtttaatttcaacccaaaacctctacattaattttcttt |
291 |
Q |
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| T |
6817698 |
ttatgtcaattttttttttcttttccgaatcaccatgtattgattcaatagtttaatttcaacccaaaacctctacattaattttcttt |
6817610 |
T |
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