View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_24 (Length: 295)
Name: NF11685_low_24
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 26414272 - 26414002
Alignment:
| Q |
22 |
aatgacaagaactatgatactgtgttaaattaatgcagatgattttcattttggttcgtagctgatatgtttggggtgtacaatgtattgattggttcat |
121 |
Q |
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| T |
26414272 |
aatgacaagaactatgatactgtgttaaattaatgcagatgattttcattttggttcgtagctcatatgtttggggtgtacaatgtattgattggttcat |
26414173 |
T |
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| Q |
122 |
agcctctgctagccccaccggtgactaatttaacccatatcgcgctttaggcagatcccagacaatccgaatctgctgctatgtccatagctaattatag |
221 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26414172 |
agcctctgctagccccaccggtgactaatttaacctatatcgcgctttaggcagatcccagacaatccgaatctgctgctatgtccatagctaattatag |
26414073 |
T |
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| Q |
222 |
aacctgcagcctgtgccatacgataatcctcaagtctgaannnnnnncttgatgcttctctctgctcctcc |
292 |
Q |
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| T |
26414072 |
aacctgcagcctgtgccatacgataatcctcaagtctgaatttttttcttgatgcttctctctgttcctcc |
26414002 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 27986729 - 27986795
Alignment:
| Q |
52 |
taatgcagatgattttcattttggttcgtagctgatatgtttggggtgtacaatgtattgattggtt |
118 |
Q |
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| T |
27986729 |
taatgcaaatgattttcattttggttcttagctgatctgtttgttgcgtacaatgtattgattggtt |
27986795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 28073261 - 28073327
Alignment:
| Q |
52 |
taatgcagatgattttcattttggttcgtagctgatatgtttggggtgtacaatgtattgattggtt |
118 |
Q |
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| T |
28073261 |
taatgcaaatgattttcattttggttcttagctgatctgtttgttgcgtacaatgtattgattggtt |
28073327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 1536743 - 1536650
Alignment:
| Q |
167 |
tttaggcagatcccagacaatccgaatctgctgc-tatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctg |
259 |
Q |
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| T |
1536743 |
tttaggcggatcccaatcaattcgaataggctgcctatgtctgtagctaattatggaacctgccgcctgtgccatataataatcctcaagtctg |
1536650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 44472549 - 44472579
Alignment:
| Q |
48 |
aaattaatgcagatgattttcattttggttc |
78 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44472549 |
aaattaatgcagatgattttcattttggttc |
44472579 |
T |
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