View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_26 (Length: 209)
Name: NF11685_low_26
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 38386645 - 38386838
Alignment:
| Q |
18 |
gacggcacatgggaatgagaaacaagaacaactctaattgaaagagaattgaggagctacacgggcaacacatcataactctatcggtttaatttctcta |
117 |
Q |
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| T |
38386645 |
gacggcacatgggaatgagaaacaagaacaactctaattgaaagagaattgaggagctacacaggcaacacatcagaactctattggtttaatttttcta |
38386744 |
T |
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| Q |
118 |
ctatgtttcttatttctaa--ctcatagagattaggtctaaaatgaatctaatgtactctgttttgaaccaaccatgttgttgtgaaactctat |
209 |
Q |
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|||| |||||||||||||| ||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38386745 |
ctatctttcttatttctaaatctcttagagattaggtctgagatgaatctaatgtattctgttttgaaccaaccatgttgttgtgaaactctat |
38386838 |
T |
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