View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_28 (Length: 204)
Name: NF11685_low_28
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 19502059 - 19502223
Alignment:
| Q |
22 |
atagttttgggtaaagatggtatccacacttgtggggttactttcgatttaggtcattgttttcggactcctctcatgatccaagagaaaaccctaacat |
121 |
Q |
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| T |
19502059 |
atagttttgggtaaagatggtatccacacttgtggggttactttcgatttaggtcattgttttcggactcctctcatgatccaagagaaaaccctaacat |
19502158 |
T |
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| Q |
122 |
tcctttcagatgcataaaattacataaaaatctaataatatgtatattgcccaaaatatatatct |
186 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
19502159 |
tccttttggatgcataaaattacataaaaatttaataatatgtatattgctcaaaatatatatct |
19502223 |
T |
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