View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_4 (Length: 509)
Name: NF11685_low_4
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Original strand, 26607879 - 26608363
Alignment:
| Q |
17 |
aaggaaatgaaatatgacaccccaaagtagaaatctacaagaaaagaatgtgaagtgaaagctttatattatgaaagtttagtgggttaggaaacaaata |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26607879 |
aaggaaatgaaatatgacaccccaaagtggaaatctacaagaaaagaatgtgaagtgaaagctttatattatgaaagtttagtgggttaggaaacaaata |
26607978 |
T |
|
| Q |
117 |
tttgggctcacaaa----gctactatacgaaagctttaaatgacaagtgattggttgaaattagttgatgaaattaagccaggttggtggtgatgattct |
212 |
Q |
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|||||||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26607979 |
tttgggctcacaaacaaagatactatactaaagttttaaataacaactgattggttgaaattagttgatgaaattaagccaggttggtggtgatgattct |
26608078 |
T |
|
| Q |
213 |
ataatgtctatatttgtttgaaaaataaaa-tcttctatagtaataagagtataaaagcaagtagatggaaatccagctcatagtttttcaggaccccac |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608079 |
ataatgtctatatttgtttgaaaaataaaaatcttctatagtaataagagtataaaagcaagtagatggaaatccagctcatagtttttcaggaccccac |
26608178 |
T |
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| Q |
312 |
gtggagaggactatgccagttcacggactctcttattttgtagggttttttattaacattnnnnnnnnccataaggtccttatagctgtctcctcgtccc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
26608179 |
gtggagaggactatgccagttcacggactctcttattttgtagggttttttattaacattaaaaaaaaccataaggttcttatagctgtctcctcgtccc |
26608278 |
T |
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| Q |
412 |
taacgctggcaacaatttagataatgactcattctgcctcttacctttctctttgtgtgtgtgttgttttgctatgttctttgtg |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608279 |
taacgctggcaacaatttagataatgactcattctgcctcttacctttctctttgtgtgtgtgttgttttgctatgttctttgtg |
26608363 |
T |
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