View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_7 (Length: 468)
Name: NF11685_low_7
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 68 - 461
Target Start/End: Complemental strand, 32192689 - 32192296
Alignment:
| Q |
68 |
aaaatatctgttaggagagattagccaacatgaatgaatccttgtacctcgagggattagtttatggaacccagtcgagaataccctggtgcaccaaaaa |
167 |
Q |
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| T |
32192689 |
aaaatatttgttaggaaagattagccaacatgaatgaatccttgtgcctcgagggattagtttatggaacccactggagaataccctggtgcaccaaaaa |
32192590 |
T |
|
| Q |
168 |
gataaataaactatgcttaatatccttatgatataaatcaaaacttgttgattatttcatcttattttggttccnnnnnnnnttaaaagcttgtcacatt |
267 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||| | |||| || ||||| | || | ||||||||||| |
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| T |
32192589 |
gataaataaactttgcttaatatccttatgatataaataaaaaattgttgatcatttccttttatattagttccattttttatgaataacttgtcacatt |
32192490 |
T |
|
| Q |
268 |
atcattttgaaaaagtactattttccaggcttcaggggaatcctatatgctcaaataacaacaccttagttcaattttgtggatctaaaagtgaaaacga |
367 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32192489 |
atcgttttgaaaaatcactattttccaggcttcaggggaatcctatatgctcaaataacaactccttagttcaattttgtggatctaaaagtgaaaacga |
32192390 |
T |
|
| Q |
368 |
tatgaatggtaactccattgtaagctgtccaagtcaaccatgccctcctccttatgaatactctgcgcagtgtgtctgtgccgtgcctttgctt |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
32192389 |
tatgaatggtaactccattgtaagctgtccaagtcaaccatgccctcctccttatgaatattctgcgcagtgtgtctgtgccgtgccattgctt |
32192296 |
T |
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