View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11685_low_9 (Length: 461)
Name: NF11685_low_9
Description: NF11685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11685_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 38752322 - 38751881
Alignment:
| Q |
19 |
acgatggcatcgaggttttgtttaagattcaaagtgtagt---ttttgccgaaaccaagacgtggcaaactgttattctgtcaaattcgcgcagttaata |
115 |
Q |
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| T |
38752322 |
acgatggcatcgaggttttgtttaagattcaaagtgtagtagtttttgccgaaaccaagacgtggcaaactgttattctgtcaaattcgcgcagttaata |
38752223 |
T |
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| Q |
116 |
tagttggtgtattattgatgcactggtttgagtttctaataaaattttggctattaaaagagaaaaaatacataagcattgtgttgatctatgcaggtgg |
215 |
Q |
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| T |
38752222 |
tagttggtgtattattaatgcactggtttgagtttctaataaaattttggctattaaaagagaaaaaatacataagcattgtgttgatctatgcaggtgg |
38752123 |
T |
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| Q |
216 |
tgaatttactaataaatgcattttcttcttcttgatctttgtaggtggtcaatttacaagcacagctagcttttctgagagagcaaacagctcaaaggtg |
315 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38752122 |
tgaattaactaataaatgcattttcttcttcctgatctttgtaggtggtcaatttacaagcacagctagcttttctgagagagcaagcagctcaaaggtg |
38752023 |
T |
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| Q |
316 |
tatcaatgccccaaattctgcaaaccctaatgagaagaactttggaaaacctactaatattctccctcaagatcttcaaagttggttccagatggaaaat |
415 |
Q |
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| T |
38752022 |
tctcaatgccccaaattctgaaaaccctaatgagaagaactttggaaaacctactaatattctccctcaagatcttcaaagttggttccagatggaaaat |
38751923 |
T |
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| Q |
416 |
tccaacatgtgttctcaatttcttcccgatttctctgcttct |
457 |
Q |
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| T |
38751922 |
tccaacatgtgttctcaatttcttcccgatttctcttcttct |
38751881 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 30904515 - 30904559
Alignment:
| Q |
376 |
tctccctcaagatcttcaaagttggttccagatggaaaattccaa |
420 |
Q |
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| T |
30904515 |
tctccctcaagatcttcaaacttggttccatgtggaaaattccaa |
30904559 |
T |
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