View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11686_high_1 (Length: 842)
Name: NF11686_high_1
Description: NF11686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11686_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 499 - 835
Target Start/End: Original strand, 10811970 - 10812296
Alignment:
| Q |
499 |
atactagacattacaatcatgcatgatattgcttctaatatttgtacttggttaatttggaataactggaacagagaaatatggttctgccattggtgca |
598 |
Q |
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| T |
10811970 |
atactagacattataatcatgcatgatattgctcctattattt----------aatttggaataactggaacagagaaatatggttctgccattggtgca |
10812059 |
T |
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| Q |
599 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaatgctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
698 |
Q |
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| T |
10812060 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaattctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
10812159 |
T |
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| Q |
699 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctatgttttgtacccttttcaagcgatgatcccttgtttttgtgttctttgaa |
798 |
Q |
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| T |
10812160 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctacgttttgtacccttttcaagcgatgatcccttatttttgtgttctttgaa |
10812259 |
T |
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| Q |
799 |
gttgctttcttcagggtagatgatgctattcttctct |
835 |
Q |
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| T |
10812260 |
gttgctttcttcagggtagatgatgctattcttctct |
10812296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 10811493 - 10811915
Alignment:
| Q |
18 |
gtttatgcatgttctggaacacatttcccaatcagaatagattgtctttgagcatcaaaaagaaaagctttagttatggaatttatgaaaatataccagt |
117 |
Q |
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| T |
10811493 |
gtttatgcatgttctggaacacatttctcaatcataatagattgtctttgagcatcagaaagagaagctttagtaatgggatttatgaaaatataccaat |
10811592 |
T |
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| Q |
118 |
ttagatgtccaagttttcatagtggtagaacttataaaatgaaaagtt-cctttgtacacaatgttgaacacctcaatttatttgagttgtgcaatttgc |
216 |
Q |
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| T |
10811593 |
ttagatgtccaagttttcatagtggtagaacatataaaatggaaatttccctttgtacacattgttgaacacctcaattta-ttgagttgtgcaatttgc |
10811691 |
T |
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| Q |
217 |
taaacacaaacagccacaatattgaggttaaccagcttttggcnnnnnnnnnnnnnnnnngttaccaatgta-------tagcaccaaaataacactaat |
309 |
Q |
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| T |
10811692 |
taaacacaaacagccacaatattgaggtgaaccagcttttggc---aacaaaataaaaaagttatcaatgtatataatatagcaccaaaatattactaat |
10811788 |
T |
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| Q |
310 |
atatattttggttaaatattacattcaatacttcattacataaatatgtaattttactacaaaagtagggaacatttaagcaaatctgtgctaattaatt |
409 |
Q |
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| T |
10811789 |
----attttgtttaaatattacattcattacttcattacataaatatgtaattttacttcaaaagtagggaacatttaagcaaatctgtgctaattaatt |
10811884 |
T |
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| Q |
410 |
actacaaaagttcacctcaaatttgatacta |
440 |
Q |
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| T |
10811885 |
actacaaaagttcacctcaaatttgatacta |
10811915 |
T |
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